FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0683600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF538 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.63 (0.0468) R2 : 0.205
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.917 (0.119) R2dC : 0.106 R2C : 0.123
β3 : -0.887 (0.159) R2dE : 0.0588 R2E : 0.0903
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.223 (0.101) R2dN8 : 0.0117 R2N8 : 0.0185
σ : 0.872
deviance : 350.32
__
_____
C
peak time of C : 8.22
E
wheather : temperature
threshold : 20.07
memory length : 443
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
338.8 0.865 3.6 0.727 0.898 -1.05 -0.442 0.334 -0.108 8.22 20.1 445 -- --
339.02 0.858 3.61 0.694 0.887 -1.12 -0.512 -- -0.119 8.12 20 469 -- --
339.27 0.858 3.59 0.742 0.894 -1.03 -- 0.483 -0.1 8.24 20.05 469 -- --
339.5 0.858 3.6 0.69 0.886 -1.13 -- -- -0.103 8.2 19.8 475 -- --
381.19 0.909 3.61 0.802 -- -1.3 -- 0.159 -0.0487 -- 20.1 559 -- --
371.41 0.903 3.65 0.304 1.01 -- -0.443 -- -0.327 8.03 -- -- -- --
371.98 0.903 3.65 0.292 1.01 -- -- -- -0.326 8.1 -- -- -- --
381.25 0.909 3.62 0.762 -- -1.31 -- -- -0.0587 -- 20.08 563 -- --
350.32 0.872 3.63 -- 0.917 -0.887 -- -- -0.223 8.22 20.07 443 -- --
428.34 0.967 3.68 0.301 -- -- -- -- -0.314 -- -- -- -- --
374.23 0.905 3.66 -- 1.02 -- -- -- -0.359 8.08 -- -- -- --
394.7 0.925 3.65 -- -- -1.08 -- -- -0.181 -- 20 510 -- --
430.73 0.969 3.68 -- -- -- -- -- -0.347 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 326.75 temperature 20 270 > th dose independent rect. 20 19
4 328.74 temperature 20 90 < th dose independent rect. 2 20
6 329.81 temperature 20 270 < th dose dependent rect. 24 7
10 330.25 temperature 20 270 < th dose independent rect. 24 20
11 330.37 temperature 20 270 < th dose independent rect. 24 8
30 331.55 temperature 20 270 < th dose independent rect. 24 16
31 331.57 temperature 20 270 > th dose independent rect. 20 16
77 334.45 temperature 20 270 < th dose dependent rect. 3 1
112 335.83 temperature 20 270 < th dose independent rect. 3 1
116 335.89 temperature 30 270 < th dose dependent rect. 24 9
122 336.04 atmosphere 1005 43200 > th dose independent rect. 8 1
126 336.17 atmosphere 1005 43200 < th dose independent rect. 9 3
139 336.45 atmosphere 1005 43200 > th dose independent rect. 8 4
145 336.56 wind 9 14400 > th dose dependent rect. 21 16
146 336.57 atmosphere 1005 43200 > th dose independent rect. 10 1
149 336.63 atmosphere 1005 43200 > th dose independent rect. 3 1
169 336.96 atmosphere 1005 43200 < th dose independent rect. 4 1
170 336.97 temperature 25 270 < th dose dependent rect. 24 20
173 337.00 atmosphere 1005 43200 < th dose independent rect. 22 14
176 337.05 temperature 20 270 < th dose independent sin 7 NA
183 337.13 atmosphere 1005 43200 < th dose independent rect. 3 9
185 337.16 atmosphere 1005 43200 > th dose independent rect. 3 9
193 337.26 atmosphere 1005 43200 < th dose independent rect. 1 11
202 337.36 temperature 20 270 > th dose independent sin 6 NA
203 337.36 atmosphere 1005 43200 < th dose independent rect. 22 8
204 337.36 atmosphere 1005 43200 > th dose independent rect. 24 12
207 337.39 atmosphere 1005 43200 < th dose independent rect. 22 4
225 337.47 atmosphere 1005 43200 < th dose independent rect. 22 1
262 337.65 temperature 25 30 < th dose dependent rect. 3 19
271 337.71 atmosphere 1005 43200 > th dose independent rect. 24 2
275 337.73 atmosphere 1005 43200 < th dose independent sin 7 NA
299 337.83 atmosphere 1005 43200 > th dose independent rect. 24 6
303 337.83 wind 9 14400 > th dose dependent rect. 18 3
318 337.87 atmosphere 1005 43200 > th dose independent rect. 22 8
394 338.17 atmosphere 1005 43200 > th dose independent sin 7 NA
445 338.36 atmosphere 1005 14400 > th dose independent rect. 22 1
465 338.44 wind 9 14400 > th dose independent rect. 18 3
473 338.47 wind 9 14400 > th dose independent rect. 21 16
495 338.58 temperature 20 90 < th dose independent sin 23 NA
515 338.62 temperature 15 30 > th dose dependent rect. 20 22
523 338.69 temperature 20 720 > th dose independent rect. 5 20
622 339.20 atmosphere 1010 43200 < th dose dependent rect. 23 1
629 339.22 temperature 15 270 > th dose dependent rect. 19 20
664 339.38 atmosphere 1005 14400 < th dose independent rect. 16 9
669 339.41 wind 9 14400 < th dose independent rect. 18 3
689 339.47 temperature 20 90 < th dose independent rect. 5 16
705 339.54 atmosphere 1005 14400 < th dose independent rect. 8 17
722 339.61 wind 3 14400 > th dose dependent rect. 1 1
723 339.63 humidity 50 14400 > th dose independent rect. 19 2
732 339.65 atmosphere 1005 14400 < th dose independent rect. 12 13
756 339.75 wind 9 14400 < th dose independent rect. 21 15
769 339.79 temperature 20 720 > th dose independent rect. 5 18
808 339.90 atmosphere 1005 14400 < th dose independent sin 17 NA
924 340.17 atmosphere 1005 14400 > th dose independent rect. 16 9
930 340.19 temperature 20 270 < th dose independent rect. 10 22
931 340.19 wind 9 14400 > th dose dependent rect. 18 7
950 340.23 wind 9 14400 > th dose dependent rect. 18 5
967 340.27 atmosphere 1005 14400 > th dose independent rect. 8 17
984 340.32 wind 9 14400 < th dose independent rect. 19 1