BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0683600 Os11g0683600|Os11g0683600
(172 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G56580.1 | chr1:21198402-21198902 REVERSE LENGTH=167 159 5e-40
AT1G09310.1 | chr1:3009109-3009648 FORWARD LENGTH=180 156 4e-39
AT4G24130.1 | chr4:12527861-12528423 FORWARD LENGTH=158 122 1e-28
AT5G46230.1 | chr5:18742593-18743024 REVERSE LENGTH=144 113 6e-26
AT5G49600.1 | chr5:20130780-20131295 FORWARD LENGTH=172 110 5e-25
AT1G30020.1 | chr1:10515874-10516347 REVERSE LENGTH=158 108 1e-24
AT5G37070.1 | chr5:14651091-14652147 FORWARD LENGTH=171 51 4e-07
AT1G55265.1 | chr1:20617326-20617853 FORWARD LENGTH=176 49 1e-06
AT3G08890.1 | chr3:2706701-2707775 FORWARD LENGTH=171 47 6e-06
>AT1G56580.1 | chr1:21198402-21198902 REVERSE LENGTH=167
Length = 166
Score = 159 bits (403), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 107/146 (73%), Gaps = 1/146 (0%)
Query: 4 VIADEIKAKAEVYYDDEICQQCTRLLLKEAGLPNGLLPLKDIMECGYVEETGFVWLKQKK 63
++ DE++A+AE Y DEIC++ T+ LKE +PNGLLPLKDI E GY ETG VWLKQKK
Sbjct: 3 LVTDEVRARAEKYTGDEICREKTKEFLKEVSMPNGLLPLKDIEEVGYDRETGIVWLKQKK 62
Query: 64 RIDHVFQSLGRLVSYGTEITAFAEKGRIKKVKGIKTRELMVWVPVEEIALDE-QKTGKLI 122
I H F+++G+LVSY TE+ A E G+IKK+ G+K +EL++WV + E+ L++ +GK+
Sbjct: 63 SITHKFEAIGKLVSYATEVIAQVEVGKIKKLTGVKAKELLIWVTLNELVLEQPTSSGKIN 122
Query: 123 CKSIAGITKTFPASAFQIPEKEEKIT 148
++ G+++TFP SAF +PE E+ T
Sbjct: 123 FRTPTGLSRTFPVSAFVVPEVEKPAT 148
>AT1G09310.1 | chr1:3009109-3009648 FORWARD LENGTH=180
Length = 179
Score = 156 bits (395), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Query: 4 VIADEIKAKAEVYYDDEICQQCTRLLLKEAGLPNGLLPLKDIMECGYVEETGFVWLKQKK 63
++ +E++AKAE+Y DEIC++ T+ LKE +PNGLLPLKDI E GY E+G VWLKQKK
Sbjct: 3 LVTEEVRAKAEMYTGDEICREKTKCFLKEISMPNGLLPLKDIEEVGYDRESGVVWLKQKK 62
Query: 64 RIDHVFQSLGRLVSYGTEITAFAEKGRIKKVKGIKTRELMVWVPVEEIALDEQKTGKLIC 123
I H F + +LVSYGTE+TA E G+IKK+ G+K +EL++WV + EI +E T K+
Sbjct: 63 SITHKFTEIDKLVSYGTEVTAIVETGKIKKLTGVKAKELLIWVTINEIYTEEPPT-KITF 121
Query: 124 KSIAGITKTFPASAFQIPEKEEKITCAIPKPVEDTSA 160
K+ +++TFP +AF +PE+ K A +P ++ S+
Sbjct: 122 KTPTTLSRTFPVTAFIVPEEPAKEEPAKEEPAKEKSS 158
>AT4G24130.1 | chr4:12527861-12528423 FORWARD LENGTH=158
Length = 157
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 96/152 (63%)
Query: 2 ALVIADEIKAKAEVYYDDEICQQCTRLLLKEAGLPNGLLPLKDIMECGYVEETGFVWLKQ 61
+V+ + AE+ Y E C + + LL+E G P G++PLK+++ECG V TG+VW+KQ
Sbjct: 5 GVVVVGGEREGAEIVYGAEECYKQSLELLEELGFPKGVMPLKNLVECGRVRATGYVWMKQ 64
Query: 62 KKRIDHVFQSLGRLVSYGTEITAFAEKGRIKKVKGIKTRELMVWVPVEEIALDEQKTGKL 121
+H F++ VSYG E+TA+ +K +KK+ G+K++++ +WVP+ E++++E K+ K+
Sbjct: 65 DTPYEHFFEATNTRVSYGLEVTAYVDKCCMKKMTGVKSKQMFLWVPIVEMSMEEPKSKKI 124
Query: 122 ICKSIAGITKTFPASAFQIPEKEEKITCAIPK 153
K+ GI ++FP + F E++ PK
Sbjct: 125 YFKTPMGIGRSFPVTGFMDEEEKRNFYLENPK 156
>AT5G46230.1 | chr5:18742593-18743024 REVERSE LENGTH=144
Length = 143
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 84/127 (66%)
Query: 13 AEVYYDDEICQQCTRLLLKEAGLPNGLLPLKDIMECGYVEETGFVWLKQKKRIDHVFQSL 72
AE+ + C+Q + +L LP GLLPL ++ E G+ + TG+VW+K K ++ H F+++
Sbjct: 14 AEICNGESNCKQKAKEILSTMNLPKGLLPLDNMTEIGHNKSTGYVWIKIKNKVQHRFKAI 73
Query: 73 GRLVSYGTEITAFAEKGRIKKVKGIKTRELMVWVPVEEIALDEQKTGKLICKSIAGITKT 132
GR VSY +E+TA E R+ ++ GIK++E+++WV + EI ++ Q ++ + G+++T
Sbjct: 74 GRNVSYDSEVTAILENRRMSQLTGIKSKEILIWVTISEIFVNHQDPTQITFANPTGLSRT 133
Query: 133 FPASAFQ 139
FP +AF+
Sbjct: 134 FPVTAFE 140
>AT5G49600.1 | chr5:20130780-20131295 FORWARD LENGTH=172
Length = 171
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 92/145 (63%), Gaps = 10/145 (6%)
Query: 4 VIADEIKAKAEVYYDDEICQQCTRLLLKEAGLPNGLLPLKDIMECGYVEETGFVWLK--- 60
++ + +KAKAEVY+ D+ C++ LL E GLPN LL K+I ECGYV++TGFVWLK
Sbjct: 1 MVTEAMKAKAEVYHGDKTCREKFGSLLSEIGLPNRLLSNKEIKECGYVKDTGFVWLKHKE 60
Query: 61 -----QKKRIDHVFQSLGRLVSYGTEITAFAEKGRIKKVKGIKTRELMVWVPVEEIALDE 115
QK+R + + +V + E+TA+ E RIKK+ G+K +E MVW+ + EI ++
Sbjct: 61 KKKEDQKRRYQDLLRFDNVVVCFEDEVTAYFEPNRIKKLTGVKAKEFMVWISLGEIQVN- 119
Query: 116 QKTGKLICKSIAG-ITKTFPASAFQ 139
+ +G + K+ G ++K+ P S F+
Sbjct: 120 RSSGLITFKTEVGLLSKSLPLSVFE 144
>AT1G30020.1 | chr1:10515874-10516347 REVERSE LENGTH=158
Length = 157
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 67/98 (68%)
Query: 14 EVYYDDEICQQCTRLLLKEAGLPNGLLPLKDIMECGYVEETGFVWLKQKKRIDHVFQSLG 73
E Y D +C + LL LP GLLPLKD+ E GY + GFVW++ + +I+H F+ +G
Sbjct: 15 ESYSDQSLCLDKAKELLALIKLPTGLLPLKDMTEVGYNKTKGFVWMRMRSKIEHTFREIG 74
Query: 74 RLVSYGTEITAFAEKGRIKKVKGIKTRELMVWVPVEEI 111
R V Y TEITAF E R++++ G+K++ELM+WVPV +I
Sbjct: 75 RRVLYDTEITAFVEDRRMRRLTGVKSKELMIWVPVNDI 112
>AT5G37070.1 | chr5:14651091-14652147 FORWARD LENGTH=171
Length = 170
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 12/114 (10%)
Query: 29 LLKEAGLPNGLLPLKDIMECGYVEETG--FVWLKQKKRIDHVFQSLGRLVSYGTEITAFA 86
LLKE GLP G+ P +D + EETG V++ + + + S+ R + T +T +
Sbjct: 57 LLKEFGLPVGIFP-QDATNYEFNEETGKLTVFIPETCEVGYRDSSVLR---FSTTVTGYL 112
Query: 87 EKGRIKKVKGIKTRELMVWVPVEEIALDEQKTGKLICKSIAGITKTFPASAFQI 140
EKG++ +V+G+KT+ +M+WV V I+ D K AGI K+ A+++
Sbjct: 113 EKGKLAEVEGMKTK-VMIWVKVTCISADSSK-----VYFTAGIKKSRSRDAYEV 160
>AT1G55265.1 | chr1:20617326-20617853 FORWARD LENGTH=176
Length = 175
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 29 LLKEAGLPNGLLPLKDIMECGYVEETGFVWLKQKKRIDHVFQSLG-RLVSYGTEITAFAE 87
LL G P GLLP ++ ++ F I + +LV YG I
Sbjct: 57 LLPRYGFPKGLLP-NNVKSYTISDDGDFT----VDLISSCYVKFSDQLVFYGKNIAGKLS 111
Query: 88 KGRIKKVKGIKTRELMVWVPVEEIALDEQKTGKLICKSIAGITKTFPASAFQ 139
G +K V+GI+ +E +W+P+ A++ + + S+ ++KT PAS F+
Sbjct: 112 YGSVKDVRGIQAKEAFLWLPIT--AMESDPSSATVVFSVGFVSKTLPASMFE 161
>AT3G08890.1 | chr3:2706701-2707775 FORWARD LENGTH=171
Length = 170
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 22/119 (18%)
Query: 29 LLKEAGLPNGLLPLKDIMECGYVEETGFVWLKQKKRIDHVFQSL-------GRLVSYGTE 81
LLKE GLP G+ P + T + + +Q +++ S+ ++ + T
Sbjct: 57 LLKEFGLPVGIFPR---------DATNYEFNEQTRKLTVFIPSICEVGYKDTSVLRFTTT 107
Query: 82 ITAFAEKGRIKKVKGIKTRELMVWVPVEEIALDEQKTGKLICKSIAGITKTFPASAFQI 140
+T F EKG++ V+G+KT+ +M+WV V I+ D K AG+ K+ A+++
Sbjct: 108 VTGFLEKGKLADVEGMKTK-VMIWVKVTSISADSSK-----VHFTAGMKKSRSRDAYEV 160
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,945,868
Number of extensions: 159862
Number of successful extensions: 403
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 10
Length of query: 172
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 80
Effective length of database: 8,584,297
Effective search space: 686743760
Effective search space used: 686743760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)