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Os11g0671000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Dormancy-associated protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.6 (0.0585) R2 : 0.669
β1 : 1.23 (0.22) R2dD : 0.0254 R2D : -0.0218
β2 : 4.58 (0.158) R2dC : 0.693 R2C : 0.481
β3 : 2.81 (0.24) R2dE : 0.116 R2E : -0.0912
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.17 (0.125) R2dN8 : 0.0842 R2N8 : 0.0394
σ : 1.09
deviance : 550.15
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C
peak time of C : 19.8
E
wheather : humidity
threshold : 73
memory length : 1547
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 2.07
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
519.86 1.07 14.5 1.54 4.49 2.78 2.46 -2.88 1.18 19.9 72 1523 1.93 --
531.49 1.07 14.5 1.34 4.65 2.85 2.64 -- 1.15 19.8 72.02 1547 2 --
535.73 1.08 14.5 1.62 4.53 3.02 -- -3.43 1.25 19.9 73.52 1560 1.88 --
550.15 1.09 14.6 1.23 4.58 2.81 -- -- 1.17 19.8 73 1547 2.07 --
1469.34 1.79 14.3 1.67 -- 2.7 -- -2.93 1.29 -- 73.01 1456 2.89 --
653.42 1.2 14.6 0.645 4.02 -- 2.14 -- 1.06 20.6 -- -- -- --
668.22 1.21 14.6 0.574 4.01 -- -- -- 1.06 20.7 -- -- -- --
1257.53 1.66 14.5 0.579 -- 2.12 -- -- 0.947 -- 70 1538 6.32 --
583.57 1.13 14.6 -- 4.89 2.76 -- -- 1 19.7 74 1610 2.21 --
1578.16 1.86 14.5 0.565 -- -- -- -- 1.03 -- -- -- -- --
676.89 1.22 14.6 -- 4.01 -- -- -- 0.997 20.7 -- -- -- --
679.88 1.22 14.5 -- -- 4 -- -- 1 -- 36 1448 9.55 --
1586.57 1.86 14.5 -- -- -- -- -- 0.965 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 522.32 humidity 80 1440 < th dose dependent rect. 6 6
7 523.17 humidity 80 1440 < th dose dependent rect. 20 16
13 526.72 humidity 70 1440 > th dose independent rect. 19 17
14 528.33 temperature 20 720 < th dose independent rect. 24 7
40 532.19 humidity 70 1440 > th dose independent rect. 24 12
42 532.29 humidity 70 1440 > th dose independent rect. 2 10
44 532.38 humidity 70 1440 > th dose independent rect. 6 6
47 532.43 humidity 70 1440 > th dose independent rect. 4 8
56 533.10 humidity 70 1440 < th dose independent rect. 19 17
57 533.44 temperature 20 720 > th dose independent rect. 5 2
64 534.28 humidity 80 1440 < th dose dependent sin 7 NA
65 534.69 humidity 70 1440 > th dose independent rect. 11 1
80 537.02 temperature 20 720 > th dose independent rect. 23 8
96 537.78 humidity 70 1440 > th dose independent sin 8 NA
101 538.43 humidity 70 1440 < th dose independent rect. 6 6
128 539.17 temperature 20 720 < th dose independent rect. 3 1
143 539.98 humidity 50 1440 > th dose dependent rect. 9 3
154 540.75 humidity 70 1440 < th dose independent sin 8 NA
160 540.99 humidity 50 1440 > th dose dependent rect. 11 1
178 542.30 humidity 50 10 > th dose dependent rect. 6 11
187 542.86 humidity 70 1440 < th dose independent rect. 10 2
194 543.56 humidity 80 10 < th dose dependent rect. 5 9
197 543.64 humidity 80 10 < th dose dependent rect. 7 7
235 545.37 temperature 20 720 < th dose independent rect. 5 1
237 545.37 radiation 10 1440 > th dose dependent rect. 16 20
266 546.31 radiation 10 1440 > th dose dependent rect. 6 6
289 546.69 temperature 20 720 > th dose independent rect. 3 4
325 548.05 radiation 1 1440 > th dose dependent rect. 9 1
329 548.20 humidity 80 10 < th dose dependent sin 4 NA
332 548.24 radiation 20 1440 > th dose independent rect. 16 20
341 548.60 radiation 30 1440 < th dose independent rect. 16 18
359 548.86 radiation 40 1440 < th dose independent rect. 16 20
370 549.16 radiation 40 1440 < th dose independent rect. 24 12
378 549.26 radiation 40 1440 < th dose independent rect. 2 10
383 549.37 radiation 40 1440 < th dose independent rect. 6 6
391 549.41 radiation 40 1440 < th dose independent rect. 4 8
411 549.64 radiation 40 1440 < th dose dependent rect. 9 1
449 550.02 radiation 40 1440 < th dose independent rect. 9 1
472 550.47 radiation 20 1440 > th dose independent rect. 16 18
521 551.23 radiation 10 1440 > th dose dependent sin 10 NA
547 551.37 temperature 30 720 < th dose dependent rect. 1 4
563 551.63 humidity 50 90 > th dose dependent rect. 5 23
586 551.77 humidity 90 10 < th dose dependent rect. 9 5
597 551.87 radiation 40 1440 < th dose dependent rect. 16 20
635 552.21 radiation 20 30 < th dose independent rect. 6 22
650 552.57 radiation 40 1440 > th dose dependent sin 11 NA
689 552.77 radiation 30 1440 < th dose independent sin 11 NA
696 552.87 radiation 40 1440 < th dose dependent rect. 6 6
698 552.89 temperature 20 720 > th dose dependent rect. 6 1
700 552.92 humidity 50 10 > th dose dependent rect. 6 23
712 553.10 radiation 40 1440 < th dose dependent rect. 24 12
717 553.15 radiation 40 1440 < th dose dependent rect. 2 10
724 553.28 radiation 40 1440 < th dose dependent rect. 4 8
751 553.56 humidity 80 10 > th dose independent rect. 6 10
776 553.89 radiation 20 1440 > th dose independent rect. 7 5
926 555.02 radiation 30 10 < th dose dependent rect. 6 22
938 555.35 radiation 30 1440 > th dose independent rect. 9 1
947 555.55 humidity 50 90 > th dose dependent rect. 23 18