BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0671000 Os11g0671000|AK060981
(125 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33830.2 | chr2:14309768-14310286 REVERSE LENGTH=109 112 4e-26
AT1G28330.5 | chr1:9934252-9935216 REVERSE LENGTH=160 100 3e-22
AT5G44300.1 | chr5:17845371-17846179 REVERSE LENGTH=115 98 1e-21
>AT2G33830.2 | chr2:14309768-14310286 REVERSE LENGTH=109
Length = 108
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 71/122 (58%), Gaps = 15/122 (12%)
Query: 5 LWDDVVAGPRPETGLEKLRKAATTRPLVINKDGDGEASGAAYKRXXXXXXXXXXXXXXXX 64
+WD+ VAGP+PE GL +LR TT+PL I G+G +S
Sbjct: 1 MWDETVAGPKPEHGLGRLRNKITTQPLDIKGVGEGSSSKTV--------------AAVAG 46
Query: 65 XXXXXXXXXXXRGSNVWRSVFHPGSNLATKSLGANLFDRP-QPNSPTVYDWLYSDETRSS 123
R NVWRSVFHPGSN+AT+ +G NLFD+P PNSPTVYDWLYSD+TRS
Sbjct: 47 SPGTPTTPGSARKENVWRSVFHPGSNIATRGMGTNLFDKPSHPNSPTVYDWLYSDDTRSK 106
Query: 124 HR 125
HR
Sbjct: 107 HR 108
>AT1G28330.5 | chr1:9934252-9935216 REVERSE LENGTH=160
Length = 159
Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 74/125 (59%), Gaps = 7/125 (5%)
Query: 1 MLEKLWDDVVAGPRPETGLEKLRKAATTRPLVINKDGDGEASGAAYKRXXXXXXXXXXXX 60
+LEKLWDDVVAGP+P+ GL +LRK TT+P+ I G+G +S R
Sbjct: 3 LLEKLWDDVVAGPQPDRGLGRLRKI-TTQPINIRDIGEGSSSKVVMHRSLTMPAAVSPGT 61
Query: 61 XXXXXXXXXXXXXXXRGSNVWRSVFHPGSNLATKSLGANLFDRP-QPNSPTVYDWLYSDE 119
R NVWRSVF+PGSNLAT+++G+N+FD+P PNSP+VYD + ++
Sbjct: 62 PTTPTTPTTP-----RKDNVWRSVFNPGSNLATRAIGSNIFDKPTHPNSPSVYDCVDNEA 116
Query: 120 TRSSH 124
R H
Sbjct: 117 QRKEH 121
>AT5G44300.1 | chr5:17845371-17846179 REVERSE LENGTH=115
Length = 114
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 68/126 (53%), Gaps = 15/126 (11%)
Query: 1 MLEKLWDDVVAGPRPETGLEKLRKAATTRPLVINKDGDGEASGAAYKRXXXXXXXXXXXX 60
+LE LWDDVVAGPRPE G + +T +N +G + +
Sbjct: 3 VLENLWDDVVAGPRPEAGGRGHLRRISTSLTSLNNTTEGMSVAGSVS------------- 49
Query: 61 XXXXXXXXXXXXXXXRGSNVWRSVFHPGSNLATKSLGANLFDRP-QPNSPTVYDWLYSDE 119
R +VWRSVFHP SN+ T+ +GAN+FD+P PNSPTVYDW+YS+E
Sbjct: 50 -LPASPATPVTPGSGRKVDVWRSVFHPASNVTTREIGANVFDKPSHPNSPTVYDWMYSNE 108
Query: 120 TRSSHR 125
TRS HR
Sbjct: 109 TRSKHR 114
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.131 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,458,763
Number of extensions: 72957
Number of successful extensions: 125
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 4
Length of query: 125
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 39
Effective length of database: 8,748,793
Effective search space: 341202927
Effective search space used: 341202927
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 105 (45.1 bits)