Os11g0668600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calmodulin binding protein-like family protein.
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Os11g0668600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calmodulin binding protein-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 264.79 | 0.765 | 3.02 | -0.396 | 0.181 | 2.68 | -0.776 | -15.7 | -0.165 | 4.77 | 30.01 | 10 | 12.9 | 2.23 |
| 272.96 | 0.769 | 3.01 | -0.131 | 0.196 | 1.85 | -0.497 | -- | -0.128 | 4.83 | 29.7 | 10 | 12.8 | 2.82 |
| 264.87 | 0.764 | 3.02 | -0.298 | 0.184 | 1.7 | -- | -7.41 | -0.173 | 5.37 | 30 | 10 | 12.9 | 3 |
| 273.7 | 0.771 | 3.01 | -0.138 | 0.211 | 1.83 | -- | -- | -0.136 | 5.23 | 29.66 | 10 | 12.8 | 2.91 |
| 266.59 | 0.765 | 3.02 | -0.292 | -- | 1.64 | -- | -7.45 | -0.165 | -- | 30 | 9 | 12.8 | 3.08 |
| 313.57 | 0.83 | 2.98 | -0.0921 | 0.173 | -- | -0.0572 | -- | -0.00388 | 9.65 | -- | -- | -- | -- |
| 313.58 | 0.829 | 2.98 | -0.0939 | 0.172 | -- | -- | -- | -0.00372 | 9.85 | -- | -- | -- | -- |
| 275.95 | 0.774 | 3.02 | -0.13 | -- | 1.76 | -- | -- | -0.126 | -- | 29.62 | 10 | 12.8 | 2.9 |
| 274.2 | 0.771 | 3.01 | -- | 0.208 | 1.82 | -- | -- | -0.12 | 5.27 | 29.66 | 10 | 12.8 | 2.94 |
| 315.36 | 0.83 | 2.99 | -0.0958 | -- | -- | -- | -- | -0.00366 | -- | -- | -- | -- | -- |
| 313.81 | 0.829 | 2.98 | -- | 0.173 | -- | -- | -- | 0.00674 | 9.89 | -- | -- | -- | -- |
| 276.39 | 0.774 | 3.01 | -- | -- | 1.75 | -- | -- | -0.111 | -- | 29.64 | 10 | 12.8 | 2.99 |
| 315.6 | 0.829 | 2.99 | -- | -- | -- | -- | -- | 0.00696 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 265.45 | temperature | 30.0 | 10 | > th | dose independent | rect. | 12 | 2 |
| 5 | 269.18 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 9 | 270.62 | radiation | 30.0 | 10 | > th | dose independent | rect. | 12 | 1 |
| 10 | 270.74 | humidity | 60.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 12 | 270.81 | wind | 7.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 13 | 270.82 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 15 | 270.91 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 17 | 271.01 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 19 | 271.13 | radiation | 20.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 20 | 271.15 | wind | 7.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 21 | 271.15 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 25 | 271.15 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 29 | 271.15 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 35 | 271.21 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 37 | 271.21 | humidity | 90.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 39 | 271.23 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 40 | 271.25 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 44 | 271.28 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 48 | 271.28 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 49 | 271.28 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 1 |
| 50 | 271.28 | temperature | 10.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 51 | 271.28 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 52 | 271.30 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 56 | 271.36 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 57 | 271.38 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 63 | 271.61 | temperature | 30.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 72 | 271.86 | wind | 1.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 73 | 272.02 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 13 | 23 |
| 74 | 272.02 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 81 | 272.59 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 88 | 272.77 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 1 | 2 |
| 89 | 272.80 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 121 | 274.12 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 1 | 3 |
| 125 | 274.45 | wind | 9.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 217 | 277.79 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 315 | 280.58 | radiation | 1.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 318 | 280.75 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 371 | 282.84 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 1 | 5 |
| 387 | 283.52 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 415 | 284.16 | humidity | 50.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 426 | 285.52 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 1 | 3 |
| 465 | 286.56 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 490 | 286.94 | temperature | 30.0 | 10 | < th | dose independent | rect. | 13 | 23 |
| 538 | 288.34 | temperature | 30.0 | 10 | < th | dose independent | sin | 18 | NA |
| 547 | 288.50 | radiation | 1.0 | 10 | > th | dose independent | rect. | 17 | 19 |
| 549 | 288.55 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 552 | 288.61 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 7 |
| 565 | 288.77 | wind | 1.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 657 | 289.63 | temperature | 30.0 | 10 | > th | dose independent | sin | 19 | NA |
| 660 | 289.65 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 24 | 2 |
| 745 | 291.00 | temperature | 30.0 | 10 | < th | dose independent | no | NA | NA |
| 756 | 291.18 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 21 | 9 |
| 855 | 292.10 | temperature | 30.0 | 10 | > th | dose independent | no | NA | NA |
| 995 | 292.44 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 1 | 1 |