BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0668600 Os11g0668600|J100035K11
(157 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G18750.1 | chr2:8125827-8128363 FORWARD LENGTH=623 58 2e-09
AT5G57580.1 | chr5:23314994-23317683 REVERSE LENGTH=648 58 3e-09
AT5G62570.2 | chr5:25114934-25116967 FORWARD LENGTH=495 54 3e-08
AT4G25800.1 | chr4:13125224-13127765 FORWARD LENGTH=602 52 2e-07
AT4G31000.1 | chr4:15103402-15105799 FORWARD LENGTH=563 52 2e-07
AT2G24300.2 | chr2:10340913-10343457 FORWARD LENGTH=600 48 2e-06
>AT2G18750.1 | chr2:8125827-8128363 FORWARD LENGTH=623
Length = 622
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 7 RLQFTSNLESPLFTGCQIKLE-------VRMINSDGNVIKSGPLSSAKIELLVLRDDFAC 59
+LQF S L PLFTG +I+ E V + + G+V+ GP +SAK++++VL DF
Sbjct: 99 QLQFRSRLSVPLFTGGKIEGEQGAAIHVVLLDMTTGHVLTVGPEASAKLDVVVLDGDFNT 158
Query: 60 DVVGNCTTEQLDEKEVKTRDGHISVLKGVVARRLVEGTCSFPGIQFREGSLR---RTFTI 116
+ + E+ + VK R G +L G V L EG + + F + S R F +
Sbjct: 159 EDDDGWSGEEFEGHLVKERQGKRPLLTGDVQVTLKEGVGTLGELIFTDNSSWIRCRKFRL 218
Query: 117 AARVNRNEATGGHRVQEAFMGPVVVQTNRNKRKFFEKFY 155
RV+ G RV+EA V+ +R + ++K Y
Sbjct: 219 GLRVSSGYCE-GMRVREAKTEAFTVKDHRG--ELYKKHY 254
>AT5G57580.1 | chr5:23314994-23317683 REVERSE LENGTH=648
Length = 647
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 7 RLQFTSNLESPLFTGCQIK------LEVRMINSD-GNVIKSGPLSSAKIELLVLRDDFAC 59
+L F S L PLFTG +++ + V +I+++ G + GP +SAK+ ++VL DF
Sbjct: 95 QLHFKSRLSLPLFTGGKVEGEQGAVIHVVLIDANTGRAVVYGPEASAKLHIVVLEGDFNT 154
Query: 60 DVVGNCTTEQLDEKEVKTRDGHISVLKGVVARRLVEGTCSFPGIQFREGSL---RRTFTI 116
+ + T E+ + VK R G +L G V L EG + + F + S R F +
Sbjct: 155 EDDEDWTQEEFESHVVKERSGKRPLLTGEVYVTLKEGVGTLGELVFTDNSSWIRSRKFRL 214
Query: 117 AARVNRNEATGGHRVQEAFMGPVVVQTNRNKRKFFEKFY 155
RV G R++EA VV+ +R + ++K Y
Sbjct: 215 GLRVVSG-CCDGMRIREAKTEAFVVKDHRG--ELYKKHY 250
>AT5G62570.2 | chr5:25114934-25116967 FORWARD LENGTH=495
Length = 494
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 12/130 (9%)
Query: 1 MASDDYRLQFTSNLESPLFTGCQIK------LEVRMIN-SDGNVIKSGPLSSAKIELLVL 53
+ S + +L+F +NL P+FT +I+ + V +I+ S G + SGP SSAK+E+ V+
Sbjct: 66 LESRNLQLKFLNNLSLPVFTSARIEGDEGQAIRVGLIDPSTGQIFSSGPASSAKLEVFVV 125
Query: 54 RDDFACDVVGNCTTEQLDEKEVKTRDGHISVLKGVVARRLVEGTCSFPGIQFREGSL--- 110
DF + V + T E + V+ R+G +L G V L +G I F + S
Sbjct: 126 EGDF--NSVSDWTDEDIRNNIVREREGKKPLLNGNVFAVLNDGIGVMDEISFTDNSSWTR 183
Query: 111 RRTFTIAARV 120
R F + R+
Sbjct: 184 SRKFRLGVRI 193
>AT4G25800.1 | chr4:13125224-13127765 FORWARD LENGTH=602
Length = 601
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 13/161 (8%)
Query: 5 DYRLQFTSNLESPLFTGCQIK------LEVRMINSD-GNVIKSGPLSSAKIELLVLRDDF 57
+ +L F S L PLFTG +++ + V +I+++ G + GP +S K+E++VL DF
Sbjct: 82 NLQLHFKSRLSLPLFTGGRVEGEQGATIHVVLIDANTGRPVTVGPEASLKLEVVVLGGDF 141
Query: 58 ACDVVGNCTTEQLDEKEVKTRDGHISVLKGVVARRLVEGTCSFPGIQFREGSL---RRTF 114
+ + T E+ + VK R+G +L G + L EG + I F + S R F
Sbjct: 142 NNEDDEDWTQEEFESHVVKEREGKRPLLTGDLFVVLKEGVGTLGEIVFTDNSSWIRSRKF 201
Query: 115 TIAARVNRNEATGGHRVQEAFMGPVVVQTNRNKRKFFEKFY 155
+ RV G R++EA V+ +R + ++K Y
Sbjct: 202 RLGLRVPSGYCD-GIRIREAKTEAFSVKDHRG--ELYKKHY 239
>AT4G31000.1 | chr4:15103402-15105799 FORWARD LENGTH=563
Length = 562
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 17/161 (10%)
Query: 5 DYRLQFTSNLESPLFTGCQIK------LEVRMINSD-GNVIKSGPLSSAKIELLVLRDDF 57
+ +L+F + + LFTG +++ + V +I+++ GNVI++G S K+ ++VL DF
Sbjct: 92 NLQLRFRTRMPPHLFTGGKVEGEQGSAIHVVLIDANTGNVIQTGEESMTKLNIVVLDGDF 151
Query: 58 ACDVVGNCTTEQLDEKEVKTRDGHISVLKGVVARRLVEGTCSFPGIQFREGSL---RRTF 114
+ + T E + EVK R+G +L G + EG + + F + S R F
Sbjct: 152 NDEDDKDWTREHFESFEVKEREGKRPILTGDRHVIIKEGVGTLGKLTFTDNSSWIRSRKF 211
Query: 115 TIAARVNRNEATGGHRVQEAFMGPVVVQTNRNKRKFFEKFY 155
+ + ATG H ++EA P V+ +R + ++K Y
Sbjct: 212 RLGVK----PATGFH-IREAKTEPFAVKDHRG--ELYKKHY 245
>AT2G24300.2 | chr2:10340913-10343457 FORWARD LENGTH=600
Length = 599
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 5 DYRLQFTSNLESPLFTGCQIK------LEVRMINSD-GNVIKSGPLSSAKIELLVLRDDF 57
+ +L F + + LFTG +++ + V +I+++ GNV+++G S++K+ ++VL DF
Sbjct: 88 NLQLHFRTRMPPHLFTGGKVEGERGSAIHVVLIDANTGNVVQTGEESASKLNVVVLEGDF 147
Query: 58 ACDVVGNCTTEQLDEKEVKTRDGHISVLKGVVARRLVEGTCSFPGIQFREGS 109
+ + T E + EVK R+G +L G L EG + + F + S
Sbjct: 148 NDEDDEDWTREHFESFEVKEREGKRPILTGDTQIVLKEGVGTLGELTFTDNS 199
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,268,986
Number of extensions: 121266
Number of successful extensions: 234
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 6
Length of query: 157
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 67
Effective length of database: 8,639,129
Effective search space: 578821643
Effective search space used: 578821643
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)