FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0666100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Receptor kinase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.019) R2 : 0.00994
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0857 (0.04) R2dN8 : 0.0128 R2N8 : 0.00994
σ : 0.358
deviance : 58.9
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.25 0.346 3.16 -0.13 0.119 -0.291 -0.228 1.12 0.0663 1.6 1.2 16 -- --
54.83 0.348 3.15 -0.0772 0.118 -0.215 -0.362 -- 0.0839 2.11 1.2 16 -- --
54.17 0.345 3.16 -0.12 0.113 -0.274 -- 0.917 0.0776 1.58 1.2 16 -- --
55.32 0.349 3.15 -0.066 0.118 -0.21 -- -- 0.086 1.76 1.2 16 -- --
54.87 0.347 3.16 -0.122 -- -0.317 -- 0.941 0.0811 -- 1.2 16 -- --
56.54 0.353 3.15 -0.0501 0.184 -- -0.331 -- 0.0753 2.69 -- -- -- --
56.92 0.353 3.15 -0.0419 0.183 -- -- -- 0.0773 2.69 -- -- -- --
56.08 0.35 3.15 -0.0668 -- -0.254 -- -- 0.09 -- 1.2 16 -- --
55.43 0.349 3.15 -- 0.119 -0.205 -- -- 0.093 1.78 1.2 16 -- --
58.87 0.359 3.15 -0.0341 -- -- -- -- 0.0819 -- -- -- -- --
56.97 0.353 3.15 -- 0.182 -- -- -- 0.0819 2.69 -- -- -- --
56.2 0.35 3.14 -- -- -0.249 -- -- 0.0972 -- 1.2 16 -- --
58.9 0.358 3.15 -- -- -- -- -- 0.0857 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.79 atmosphere 1005.0 30 > th dose dependent rect. 2 1
2 46.85 atmosphere 1005.0 30 > th dose independent rect. 2 1
3 46.86 temperature 20.0 30 > th dose dependent rect. 2 1
7 46.95 wind 3.0 30 < th dose independent rect. 2 1
8 46.96 temperature 20.0 30 > th dose independent rect. 2 1
9 46.97 wind 5.0 30 < th dose dependent rect. 2 1
14 47.01 temperature 25.0 30 < th dose independent rect. 2 1
19 47.10 temperature 10.0 30 > th dose independent rect. 2 1
22 47.10 humidity 50.0 30 > th dose independent rect. 2 1
26 47.10 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 47.10 radiation 1.0 30 < th dose independent rect. 2 1
33 47.10 precipitation 0.1 30 < th dose independent rect. 2 1
34 47.10 temperature 10.0 30 > th dose independent rect. 3 23
35 47.10 radiation 1.0 30 < th dose dependent rect. 2 1
40 47.10 precipitation 0.1 30 < th dose dependent rect. 2 1
41 47.15 humidity 50.0 30 > th dose dependent rect. 2 1
48 47.52 atmosphere 1015.0 30 < th dose dependent rect. 2 1
49 47.63 temperature 30.0 30 < th dose dependent rect. 2 1
52 47.98 wind 1.0 30 > th dose independent rect. 2 1
100 49.65 wind 9.0 1440 < th dose independent rect. 3 1
101 49.65 temperature 10.0 1440 > th dose independent rect. 3 1
104 49.65 temperature 30.0 1440 < th dose independent rect. 3 1
108 49.65 humidity 50.0 1440 > th dose independent rect. 3 1
117 49.65 atmosphere 995.0 1440 > th dose independent rect. 3 1
118 49.65 radiation 1.0 1440 < th dose independent rect. 3 1
138 49.65 temperature 10.0 1440 > th dose independent rect. 4 23
141 49.65 radiation 1.0 1440 < th dose dependent rect. 3 1
159 50.00 wind 9.0 30 < th dose independent rect. 3 23
167 50.71 atmosphere 995.0 30 > th dose independent rect. 3 23
172 50.90 precipitation 0.1 30 < th dose independent rect. 3 23
173 50.90 precipitation 0.1 30 < th dose dependent rect. 3 23
178 51.63 temperature 25.0 270 > th dose independent rect. 23 3
183 51.75 temperature 25.0 270 > th dose dependent rect. 23 3
211 52.44 humidity 50.0 30 > th dose independent rect. 3 23
236 52.96 wind 3.0 30 < th dose dependent rect. 24 3
253 53.28 temperature 30.0 30 < th dose independent rect. 3 23
256 53.32 wind 1.0 10 > th dose independent rect. 22 9
264 53.44 wind 1.0 30 < th dose independent rect. 24 3
268 53.53 temperature 25.0 270 > th dose independent sin 11 NA
270 53.54 temperature 25.0 270 > th dose independent rect. 18 9
300 53.60 temperature 20.0 30 > th dose dependent rect. 19 8
304 53.62 temperature 25.0 270 < th dose independent sin 11 NA
309 53.69 temperature 25.0 270 > th dose independent rect. 22 10
315 53.74 humidity 90.0 90 < th dose independent rect. 2 1
320 53.75 wind 3.0 10 < th dose dependent rect. 11 16
323 53.76 wind 3.0 10 < th dose dependent rect. 16 11
342 53.87 wind 1.0 10 > th dose independent sin 17 NA
355 53.91 wind 1.0 10 < th dose independent rect. 11 16
364 53.93 wind 1.0 10 < th dose independent rect. 22 5
372 53.94 temperature 25.0 270 < th dose independent rect. 19 10
384 53.96 temperature 25.0 270 > th dose independent rect. 18 14
400 54.03 wind 1.0 10 > th dose independent rect. 21 23
403 54.04 wind 1.0 10 > th dose independent rect. 1 23
404 54.04 wind 1.0 10 > th dose dependent rect. 22 9
412 54.07 wind 1.0 10 > th dose independent rect. 8 23
450 54.17 wind 1.0 10 > th dose independent rect. 22 21
490 54.27 atmosphere 1015.0 30 < th dose independent rect. 3 23
493 54.27 wind 3.0 10 < th dose dependent rect. 7 20
504 54.30 wind 1.0 10 < th dose independent rect. 7 20
514 54.32 wind 1.0 30 > th dose independent rect. 3 23
535 54.36 temperature 25.0 720 < th dose independent rect. 18 7
554 54.40 wind 1.0 10 > th dose independent rect. 16 15
563 54.42 humidity 90.0 90 < th dose independent rect. 1 3
596 54.47 radiation 20.0 10 < th dose dependent rect. 3 23
635 54.53 wind 1.0 10 > th dose independent rect. 14 17
642 54.54 wind 1.0 10 > th dose independent rect. 22 13
704 54.63 radiation 10.0 30 < th dose independent rect. 3 23
707 54.64 temperature 30.0 14400 < th dose independent rect. 4 5
710 54.64 wind 9.0 720 < th dose independent rect. 15 16
718 54.65 radiation 10.0 30 > th dose independent rect. 7 1
732 54.66 temperature 30.0 14400 < th dose independent rect. 23 10
739 54.67 humidity 90.0 270 < th dose independent rect. 24 1
747 54.68 temperature 25.0 1440 > th dose independent rect. 24 1
748 54.68 temperature 25.0 1440 < th dose independent rect. 24 1
755 54.68 humidity 90.0 90 < th dose independent rect. 24 21
762 54.69 temperature 30.0 14400 > th dose independent rect. 8 1
795 54.70 humidity 50.0 30 > th dose dependent rect. 3 23
802 54.71 temperature 30.0 14400 > th dose dependent rect. 8 1
812 54.71 temperature 25.0 720 > th dose dependent rect. 15 11
818 54.72 wind 1.0 10 > th dose independent no NA NA
821 54.72 temperature 30.0 14400 < th dose independent rect. 2 7
822 54.72 humidity 90.0 90 < th dose independent rect. 24 8
828 54.72 temperature 30.0 14400 < th dose independent rect. 19 14
898 54.77 radiation 20.0 720 > th dose independent rect. 15 2
932 54.78 temperature 25.0 4320 > th dose independent rect. 19 7
933 54.78 temperature 25.0 4320 < th dose independent rect. 19 7
961 54.79 temperature 20.0 90 > th dose dependent rect. 19 13
978 54.80 temperature 25.0 720 > th dose dependent rect. 18 8