BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0666100 Os11g0666100|AK109326
         (219 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17780.1  | chr2:7725155-7726952 REVERSE LENGTH=417            110   8e-25
AT4G35920.1  | chr4:17012106-17014192 REVERSE LENGTH=422          108   2e-24

>AT2G17780.1 | chr2:7725155-7726952 REVERSE LENGTH=417
          Length = 416

 Score =  110 bits (274), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 59/139 (42%), Positives = 81/139 (58%)

Query: 15  WDVTGHAATVAQLVGADVGGLISMIMQAAMTAQQNKKECEQLARRVFTIAELLQHLQDPE 74
           WD  G  A+VAQL G D   LI MI+ AA TA+ +KK C Q A  +  I  LL+ +++ E
Sbjct: 5   WDQLGEIASVAQLTGIDALKLIGMIVNAANTARMHKKNCRQFAHHLKLIRNLLEQIKNSE 64

Query: 75  VLRRPEIRRPLTGLDDTLREAHELVLSCQDKSAVYRLVMAGRQAERFRDVQSRIDSYLLV 134
           + +R EI  PL GLDD LR ++ LV SCQ+KS +Y L M      +F   Q+ ID +L +
Sbjct: 65  MNQRSEILEPLQGLDDALRRSYILVKSCQEKSYLYLLAMGWNIVNQFEKAQNEIDLFLKI 124

Query: 135 FPFISHIDITRRLDRIYNI 153
            P I+  D  R  +R+  I
Sbjct: 125 VPLINMADNARIRERLEAI 143



>AT4G35920.1 | chr4:17012106-17014192 REVERSE LENGTH=422
          Length = 421

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 81/139 (58%)

Query: 15  WDVTGHAATVAQLVGADVGGLISMIMQAAMTAQQNKKECEQLARRVFTIAELLQHLQDPE 74
           WD  G  A+VAQL G D   LI +I++AA TA  +KK C Q A+ +  I  LL+ L+  E
Sbjct: 5   WDGLGEIASVAQLTGLDAVKLIGLIVKAANTAWMHKKNCRQFAQHLKLIGNLLEQLKISE 64

Query: 75  VLRRPEIRRPLTGLDDTLREAHELVLSCQDKSAVYRLVMAGRQAERFRDVQSRIDSYLLV 134
           + + PE R PL GL+D LR ++ LV SC+D+S +Y L M      +FR  Q  ID +L +
Sbjct: 65  MKKYPETREPLEGLEDALRRSYLLVNSCRDRSYLYLLAMGWNIVYQFRKHQDEIDRFLKI 124

Query: 135 FPFISHIDITRRLDRIYNI 153
            P I+ +D  R  +R   I
Sbjct: 125 IPLITLVDNARIRERFEYI 143



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,474,011
Number of extensions: 111090
Number of successful extensions: 379
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 124
Effective length of database: 8,502,049
Effective search space: 1054254076
Effective search space used: 1054254076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)