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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0659600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Virulence factor, pectin lyase fold family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0489) R2 : 0.125
β1 : 0.309 (0.179) R2dD : 0.006 R2D : 0.00462
β2 : -- (--) R2dC : -- R2C : --
β3 : 10.1 (1.31) R2dE : 0.511 R2E : -0.388
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 22.2 (2.94) R2dD*E : 0.497 R2D*E : -0.383
γ1 : -0.0405 (0.104) R2dN8 : 0.000395 R2N8 : -0.000127
σ : 0.911
deviance : 382.22
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 22.68
memory length : 240
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.6
open length of G : 0.203

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
374.07 0.909 3.03 0.243 0.321 8.73 1.47 19.7 -0.0402 6.49 23.03 256 16.5 0.398
428.52 0.972 3.01 0.305 0.212 1.34 0.472 -- -0.0543 6.05 22.39 112 18 0.212
377.52 0.905 3.04 0.283 0.308 9.33 -- 20.3 -0.0417 6.45 22.8 259 16.6 0.2
413.34 0.947 3 0.353 0.347 2.2 -- -- -0.0254 6.29 25.08 156 17.7 0.577
382.22 0.911 3.04 0.309 -- 10.1 -- 22.2 -0.0405 -- 22.68 240 16.6 0.203
431.43 0.974 3.01 0.295 0.18 -- 0.515 -- -0.0635 6.06 -- -- -- --
432.08 0.973 3.01 0.3 0.183 -- -- -- -0.0655 5.89 -- -- -- --
418.36 0.953 3.01 0.362 -- 2.11 -- -- -0.0153 -- 24.55 131 17.8 0.479
416.52 0.951 3.01 -- 0.332 2.31 -- -- -0.0476 6.47 24.9 162 17.7 0.483
433.82 0.973 3.02 0.305 -- -- -- -- -0.0613 -- -- -- -- --
434.45 0.975 3.02 -- 0.188 -- -- -- -0.0989 5.82 -- -- -- --
421.47 0.956 3.01 -- -- 2.2 -- -- -0.0512 -- 24.5 129 17.9 0.217
436.28 0.975 3.02 -- -- -- -- -- -0.0951 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 383.69 temperature 25.0 270 < th dose dependent rect. 16 1
2 387.56 wind 5.0 90 > th dose dependent rect. 17 17
3 390.16 wind 7.0 30 > th dose independent rect. 19 1
5 390.78 temperature 25.0 10 < th dose dependent rect. 2 19
6 390.85 wind 5.0 10 > th dose dependent rect. 19 1
9 391.49 humidity 90.0 30 < th dose dependent rect. 2 4
11 391.58 radiation 20.0 1440 > th dose independent rect. 6 1
32 392.39 wind 5.0 1440 < th dose independent rect. 8 1
35 392.51 temperature 25.0 270 < th dose independent rect. 16 1
37 392.78 wind 7.0 10 > th dose dependent rect. 19 15
40 393.01 humidity 90.0 1440 < th dose dependent rect. 3 1
44 393.32 wind 5.0 90 > th dose independent rect. 17 18
46 393.47 radiation 20.0 1440 > th dose dependent rect. 6 1
63 393.71 wind 5.0 1440 > th dose dependent rect. 8 1
65 393.78 temperature 20.0 270 < th dose dependent rect. 2 1
68 393.96 atmosphere 995.0 14400 < th dose dependent rect. 14 2
78 394.03 atmosphere 995.0 14400 < th dose independent rect. 14 1
100 394.46 wind 5.0 1440 > th dose independent rect. 7 3
102 394.50 wind 5.0 1440 > th dose independent rect. 8 1
116 394.83 atmosphere 995.0 14400 > th dose independent rect. 10 6
117 394.87 humidity 90.0 1440 < th dose independent rect. 5 1
131 395.09 atmosphere 995.0 14400 > th dose independent rect. 15 1
133 395.15 atmosphere 1005.0 270 > th dose dependent rect. 16 2
159 395.80 radiation 20.0 1440 < th dose independent rect. 22 9
172 395.88 humidity 90.0 270 < th dose dependent rect. 2 1
218 396.04 temperature 20.0 270 < th dose independent rect. 2 1
224 396.25 wind 5.0 90 > th dose dependent rect. 8 1
237 396.70 wind 7.0 90 > th dose independent rect. 8 1
318 397.42 radiation 20.0 1440 < th dose independent rect. 5 2
339 397.90 wind 5.0 30 > th dose independent rect. 19 15
350 398.24 humidity 90.0 1440 < th dose dependent rect. 5 1
353 398.40 temperature 25.0 10 < th dose dependent rect. 24 21
362 398.53 humidity 90.0 1440 < th dose dependent rect. 2 4
367 398.60 wind 5.0 1440 > th dose independent rect. 3 7
372 398.70 humidity 90.0 30 < th dose independent rect. 3 3
378 398.94 temperature 20.0 720 < th dose independent rect. 19 1
384 399.08 temperature 20.0 90 < th dose independent rect. 2 18
412 399.57 wind 5.0 1440 < th dose independent rect. 3 7
420 399.71 humidity 80.0 270 < th dose independent rect. 2 1
441 399.94 wind 5.0 1440 > th dose dependent rect. 3 7
442 399.95 wind 9.0 14400 > th dose independent rect. 18 4
449 400.02 wind 9.0 14400 > th dose dependent rect. 18 5
452 400.06 wind 9.0 14400 > th dose dependent rect. 18 8
475 400.28 precipitation 0.1 4320 > th dose dependent rect. 17 1
495 400.60 radiation 20.0 1440 < th dose independent rect. 19 12
500 400.70 wind 5.0 90 > th dose dependent rect. 17 6
505 400.75 wind 9.0 14400 < th dose independent rect. 18 9
524 400.96 wind 5.0 90 > th dose independent rect. 17 20
526 400.98 humidity 90.0 270 < th dose dependent rect. 24 7
556 401.46 wind 9.0 14400 < th dose independent rect. 18 5
567 401.55 temperature 20.0 90 < th dose independent rect. 13 6
568 401.55 humidity 70.0 1440 > th dose dependent rect. 3 1
575 401.59 wind 5.0 14400 > th dose independent rect. 17 4
578 401.60 temperature 20.0 90 < th dose independent rect. 15 4
644 402.05 temperature 20.0 90 < th dose independent rect. 10 9
694 402.49 wind 9.0 14400 > th dose dependent rect. 18 16
720 402.59 wind 5.0 14400 > th dose independent rect. 17 1
726 402.59 wind 5.0 14400 > th dose dependent rect. 17 5
734 402.66 wind 5.0 14400 < th dose independent rect. 17 5
750 402.81 atmosphere 995.0 14400 < th dose independent rect. 18 1
753 402.81 atmosphere 995.0 14400 < th dose dependent rect. 18 1
783 403.00 atmosphere 995.0 14400 > th dose independent rect. 18 1
831 403.54 temperature 20.0 720 > th dose independent rect. 13 10
841 403.62 temperature 20.0 90 < th dose dependent rect. 10 10
844 403.66 wind 9.0 14400 > th dose independent rect. 18 16
879 403.86 temperature 25.0 10 < th dose dependent rect. 2 9
918 404.13 wind 9.0 14400 > th dose dependent rect. 20 6
927 404.16 wind 5.0 14400 > th dose dependent sin 14 NA
934 404.17 wind 5.0 14400 > th dose independent sin 14 NA
940 404.18 wind 5.0 14400 > th dose independent rect. 15 19
944 404.20 humidity 80.0 1440 > th dose dependent rect. 5 1
952 404.24 wind 5.0 14400 > th dose independent rect. 16 13
965 404.27 wind 5.0 14400 > th dose dependent rect. 16 18
977 404.34 atmosphere 1005.0 14400 < th dose dependent rect. 14 1
980 404.36 wind 5.0 14400 < th dose independent rect. 17 1
982 404.36 wind 9.0 14400 < th dose independent rect. 18 16
989 404.38 wind 9.0 14400 > th dose independent rect. 20 6
991 404.38 wind 9.0 14400 < th dose independent rect. 20 7
994 404.39 wind 5.0 30 > th dose dependent sin 10 NA
999 404.40 humidity 90.0 1440 < th dose independent rect. 1 5
1000 404.41 wind 7.0 14400 < th dose independent rect. 20 2