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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0658900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lipase, class 3 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.69 (0.0699) R2 : 0.846
β1 : -3.89 (0.349) R2dD : 0.134 R2D : 0.36
β2 : 0.966 (0.136) R2dC : 0.0177 R2C : 0.00312
β3 : -4.3 (0.187) R2dE : 0.297 R2E : 0.566
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.38 (0.827) R2dD*E : 0.0334 R2D*E : 0.233
γ1 : -0.539 (0.155) R2dN8 : 0.0096 R2N8 : 0.038
σ : 1.02
deviance : 477.97
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_____
C
peak time of C : 9.22
E
wheather : temperature
threshold : 21.2
memory length : 5169
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 3.17
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
467.32 1.02 4.69 -3.78 0.924 -4.35 -1.8 4.48 -0.532 9.93 21.16 5172 2.32 --
527.04 1.07 4.79 -4.07 0.922 -4.9 -1.58 -- -0.448 9.25 21.1 8060 1.96 --
477.97 1.02 4.69 -3.89 0.966 -4.3 -- 4.38 -0.539 9.22 21.2 5169 3.17 --
528.56 1.07 4.87 -4.55 0.834 -4.64 -- -- -0.759 9.24 21 8060 2.71 --
507.33 1.05 4.67 -3.7 -- -3.92 -- 4.94 -0.422 -- 21.4 5624 3.07 --
1110.29 1.56 5.31 -7.97 0.542 -- -1.77 -- -2.65 10.5 -- -- -- --
1122.45 1.57 5.31 -8.04 0.567 -- -- -- -2.65 9.76 -- -- -- --
553.31 1.1 4.91 -4.88 -- -4.26 -- -- -0.856 -- 21.17 7018 2.97 --
510.15 1.05 4.65 -- 0.808 -7.27 -- -- 0.0122 10.1 18.6 29649 1.68 --
1141.62 1.58 5.33 -8.05 -- -- -- -- -2.65 -- -- -- -- --
2826.32 2.49 5.11 -- 0.609 -- -- -- -1.76 10.8 -- -- -- --
514.82 1.06 4.71 -- -- -7.4 -- -- 0.0668 -- 18.71 28769 5.19 --
2849.25 2.49 5.12 -- -- -- -- -- -1.76 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 430.56 radiation 40 43200 < th dose independent rect. 15 17
2 432.39 radiation 40 43200 < th dose independent rect. 15 12
3 432.41 radiation 30 43200 > th dose dependent rect. 16 16
4 432.54 radiation 40 43200 < th dose independent rect. 15 10
7 432.67 radiation 40 43200 < th dose independent rect. 15 4
8 432.67 radiation 40 43200 < th dose independent rect. 15 8
20 434.53 radiation 30 43200 > th dose dependent rect. 7 1
37 438.45 radiation 40 43200 < th dose independent rect. 6 2
40 438.71 radiation 40 43200 < th dose independent rect. 22 10
53 439.27 radiation 40 43200 < th dose independent rect. 24 8
62 439.82 radiation 40 43200 < th dose independent rect. 2 6
66 441.81 radiation 10 43200 < th dose independent rect. 16 11
67 441.82 radiation 10 43200 < th dose independent rect. 16 7
68 441.82 radiation 10 43200 < th dose independent rect. 16 9
70 441.83 radiation 10 43200 < th dose independent rect. 16 4
78 442.84 radiation 10 43200 < th dose independent rect. 16 15
79 443.16 temperature 15 43200 > th dose independent rect. 24 1
81 443.73 radiation 1 43200 < th dose independent rect. 10 1
82 443.73 radiation 1 43200 < th dose dependent rect. 10 1
83 444.54 radiation 1 43200 > th dose independent rect. 10 1
107 447.67 radiation 10 43200 < th dose independent rect. 4 3
108 447.68 radiation 10 43200 < th dose independent rect. 22 9
112 447.72 radiation 10 43200 < th dose independent rect. 24 7
113 447.73 radiation 10 43200 < th dose independent rect. 2 5
152 450.97 temperature 15 43200 < th dose independent rect. 24 1
157 452.68 temperature 15 43200 < th dose independent rect. 24 3
185 453.68 radiation 10 43200 < th dose independent sin 13 NA
204 454.70 radiation 1 43200 > th dose dependent rect. 5 1
221 454.88 radiation 1 43200 < th dose dependent rect. 8 4
267 456.87 radiation 1 43200 < th dose independent rect. 8 3
270 457.06 radiation 1 43200 > th dose independent rect. 8 3
296 458.59 temperature 15 43200 < th dose dependent rect. 1 1
322 460.44 radiation 40 43200 < th dose independent sin 13 NA
327 460.99 radiation 20 43200 > th dose independent rect. 17 14
329 461.13 radiation 20 43200 > th dose independent rect. 6 1
370 462.74 temperature 15 43200 < th dose dependent rect. 23 4
379 463.84 radiation 1 43200 > th dose dependent rect. 17 14
400 464.62 radiation 10 43200 < th dose dependent rect. 5 1
459 467.79 temperature 25 14400 > th dose independent rect. 10 1
486 469.84 radiation 1 43200 > th dose dependent rect. 16 16
487 469.92 radiation 20 43200 < th dose dependent rect. 22 8
495 470.18 radiation 20 43200 < th dose dependent rect. 19 11
497 470.22 radiation 20 43200 < th dose dependent rect. 24 6
501 470.26 radiation 20 43200 < th dose dependent rect. 2 4
536 471.00 temperature 25 14400 < th dose independent rect. 10 1
579 474.53 temperature 20 14400 < th dose independent rect. 5 1
580 474.53 radiation 30 43200 < th dose dependent rect. 18 13
582 474.57 temperature 20 43200 > th dose independent rect. 14 1
636 476.80 temperature 20 43200 < th dose independent rect. 14 1
643 477.33 radiation 40 43200 < th dose dependent rect. 16 16
658 477.70 temperature 15 43200 > th dose independent rect. 11 1
710 480.74 radiation 1 43200 > th dose dependent rect. 18 1
720 480.75 temperature 20 14400 > th dose independent rect. 5 1
721 480.75 wind 1 43200 < th dose dependent rect. 19 9
731 481.23 radiation 40 43200 > th dose dependent rect. 13 20
755 483.19 humidity 90 43200 > th dose dependent rect. 23 18
801 484.72 temperature 15 43200 > th dose independent rect. 23 13
857 486.27 humidity 90 43200 > th dose dependent rect. 23 13
882 486.69 radiation 40 43200 > th dose dependent rect. 13 3
902 486.83 humidity 90 43200 > th dose dependent rect. 23 10
925 487.42 temperature 15 43200 < th dose independent rect. 11 1
974 488.33 humidity 90 43200 > th dose dependent rect. 3 5