BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0658900 Os11g0658900|J090092E19
         (114 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14075.1  | chr3:4663819-4666338 REVERSE LENGTH=643            125   4e-30
AT4G16070.1  | chr4:9096808-9100596 REVERSE LENGTH=655            124   9e-30

>AT3G14075.1 | chr3:4663819-4666338 REVERSE LENGTH=643
          Length = 642

 Score =  125 bits (314), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 55/95 (57%), Positives = 73/95 (76%)

Query: 3   VMKPSFTIVRDKSTKSFILFIRGATSVKDRLTAATAAEVPFHHVVLKEGRVSNVVVGHVH 62
           ++KP+FT++ D +TK F+L IRG  S+KD LTAAT A VPFHH V+ E  VSN+V+G+ H
Sbjct: 166 ILKPAFTVLVDHNTKYFLLLIRGTHSIKDTLTAATGAIVPFHHTVVNERGVSNLVLGYAH 225

Query: 63  CGMVAAARWIADQAIPCLSRAVEQFPDYRIKVINQ 97
           CGMVAAAR IA  A PCL + +EQ+PDY+IK++  
Sbjct: 226 CGMVAAARCIAKLATPCLLKGLEQYPDYKIKIVGH 260



>AT4G16070.1 | chr4:9096808-9100596 REVERSE LENGTH=655
          Length = 654

 Score =  124 bits (311), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 50/95 (52%), Positives = 75/95 (78%)

Query: 3   VMKPSFTIVRDKSTKSFILFIRGATSVKDRLTAATAAEVPFHHVVLKEGRVSNVVVGHVH 62
           +M+P+FTI+RD ++K  +L IRG  S+KD LTAAT A VPFHH VL +G +SN+V+G+ H
Sbjct: 164 IMQPAFTIIRDTNSKCILLLIRGTHSIKDTLTAATGAVVPFHHSVLHDGGLSNLVLGYAH 223

Query: 63  CGMVAAARWIADQAIPCLSRAVEQFPDYRIKVINQ 97
           CGMVAAARWIA  ++PCL +A+++ P ++++++  
Sbjct: 224 CGMVAAARWIAKLSVPCLLKALDENPSFKVQIVGH 258



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,147,954
Number of extensions: 66095
Number of successful extensions: 190
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 2
Length of query: 114
Length of database: 11,106,569
Length adjustment: 83
Effective length of query: 31
Effective length of database: 8,831,041
Effective search space: 273762271
Effective search space used: 273762271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)