Os11g0657200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 2OG-Fe(II) oxygenase domain containing protein.
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Os11g0657200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 2OG-Fe(II) oxygenase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.47 | 0.264 | 10.2 | -1.7 | 0.144 | 0.488 | -0.224 | -0.971 | -0.41 | 24 | 21.4 | 1862 | -- | -- |
| 33.7 | 0.27 | 10.2 | -1.49 | 0.118 | 0.575 | -0.266 | -- | -0.367 | 23.6 | 21.4 | 2585 | -- | -- |
| 31.68 | 0.262 | 10.2 | -1.7 | 0.142 | 0.486 | -- | -0.999 | -0.414 | 0.169 | 21.3 | 1922 | -- | -- |
| 33.8 | 0.271 | 10.2 | -1.44 | 0.146 | 0.556 | -- | -- | -0.357 | 0.282 | 21.3 | 2013 | -- | -- |
| 32.7 | 0.266 | 10.2 | -1.73 | -- | 0.5 | -- | -1.01 | -0.429 | -- | 21.59 | 2216 | -- | -- |
| 42.34 | 0.305 | 10.1 | -1.2 | 0.158 | -- | -0.269 | -- | -0.193 | 23.7 | -- | -- | -- | -- |
| 42.66 | 0.306 | 10.1 | -1.19 | 0.159 | -- | -- | -- | -0.192 | 23.9 | -- | -- | -- | -- |
| 34.8 | 0.275 | 10.2 | -1.46 | -- | 0.584 | -- | -- | -0.36 | -- | 21.37 | 2087 | -- | -- |
| 78.44 | 0.412 | 10.1 | -- | 0.108 | 0.203 | -- | -- | -0.134 | 0.0872 | 22.3 | 1267 | -- | -- |
| 44.26 | 0.311 | 10.1 | -1.18 | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
| 79.76 | 0.418 | 10.1 | -- | 0.146 | -- | -- | -- | -0.0595 | 23.4 | -- | -- | -- | -- |
| 60.73 | 0.363 | 10.1 | -- | -- | -0.671 | -- | -- | 0.161 | -- | 21.1 | 47520 | -- | -- |
| 81.1 | 0.42 | 10.1 | -- | -- | -- | -- | -- | -0.0585 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.71 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 2 | 28.84 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 14 | 29.66 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 16 | 29.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 13 |
| 19 | 29.72 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 21 | 29.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 11 |
| 96 | 30.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 109 | 30.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 136 | 30.38 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 180 | 30.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 196 | 30.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 202 | 30.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 212 | 30.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 219 | 30.79 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 240 | 30.85 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 242 | 30.85 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 272 | 30.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 12 |
| 276 | 30.93 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 282 | 30.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 292 | 30.95 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 300 | 30.96 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 309 | 30.97 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 326 | 31.00 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 353 | 31.02 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 412 | 31.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 422 | 31.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 6 |
| 434 | 31.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 459 | 31.10 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 460 | 31.10 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 488 | 31.12 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 490 | 31.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 504 | 31.13 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 507 | 31.13 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 532 | 31.15 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 564 | 31.17 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 566 | 31.17 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 606 | 31.18 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 720 | 31.25 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 794 | 31.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 862 | 31.33 | humidity | 90 | 14400 | > th | dose independent | sin | 11 | NA |
| 921 | 31.36 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 923 | 31.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 932 | 31.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 935 | 31.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 944 | 31.39 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 949 | 31.39 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |