BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0657200 Os11g0657200|AK059959
(259 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G02485.1 | chr4:1092695-1094437 FORWARD LENGTH=227 228 3e-60
AT1G31600.1 | chr1:11313376-11315199 REVERSE LENGTH=432 72 3e-13
>AT4G02485.1 | chr4:1092695-1094437 FORWARD LENGTH=227
Length = 226
Score = 228 bits (581), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 154/243 (63%), Gaps = 40/243 (16%)
Query: 21 FGDSSDSE-------ADDLPVGGAGREQWRWEAVEGVRGLWLCAAFLSADEQSRLLTAIR 73
FGDSSD E + + +G + WE VE + GLWL FLS QS LL+AI
Sbjct: 12 FGDSSDDEDIADRPGKETIGIGDSAV----WERVEEINGLWLYRNFLSIAHQSHLLSAIL 67
Query: 74 REGWF-SDARNQAMRFGDLPSWAVELSALIHEAICFGDVRVGCGLELKNEDEDACPLPSD 132
EGWF ++ NQAMRFGDLPSWA ELS LI E + E D L +D
Sbjct: 68 NEGWFVEESINQAMRFGDLPSWATELSDLIRETL---------------ESVDLPVLSAD 112
Query: 133 LLWRKPLFDQMIANRYEPGEGICAHVDLMRFDDGIAIVSLESPCVMHFSRAEQEVPICET 192
LLWR+PLFDQ+I N Y+PGEGICAHVDL+RF+DGIAIVSLESPCVM FS AE+
Sbjct: 113 LLWREPLFDQLIVNLYQPGEGICAHVDLLRFEDGIAIVSLESPCVMRFSPAEKN------ 166
Query: 193 LESVHAEPTKIPVYLNPGSLVLMSGDARYLWKHEINRKP-GAQQWGGRELEQQIRTSITL 251
E + V LNPGSL+LMSG+ARY WKHEINRK G Q W G E++Q+ R SITL
Sbjct: 167 ------EYEAVDVLLNPGSLILMSGEARYRWKHEINRKQNGFQLWEGEEIDQKRRISITL 220
Query: 252 RKL 254
RKL
Sbjct: 221 RKL 223
>AT1G31600.1 | chr1:11313376-11315199 REVERSE LENGTH=432
Length = 431
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 91/223 (40%), Gaps = 28/223 (12%)
Query: 49 GVRGLWLCAAFLSADEQSRLLTAIRREGWFSDARNQAMRFGDLPSWAVELSALIHEAICF 108
+ GL+L F++ E+ +LL A+ W A+ + +G C+
Sbjct: 209 NIPGLFLLPDFVTVAEEQQLLAAVDARHWIGLAKRRVQHYG--------------YEFCY 254
Query: 109 GDVRVGCGLELKNEDEDACPLPSDLLWRKPLFD---------QMIANRYEPGEGICAHVD 159
G V L P+ + ++ P FD Q+ N Y G G+ H+D
Sbjct: 255 GTRNVDTKKRLGELPSFVSPI-LERIYLFPNFDNGSASLNLDQLTVNEYPSGVGLSPHID 313
Query: 160 LMR-FDDGIAIVSLESPCVMHFSR---AEQEVPICETLESVHAEPTKIPVYLNPGSLVLM 215
F+D I +SL PC+M F R + + + +S + K +YL P S++L+
Sbjct: 314 THSAFEDCIFSLSLAGPCIMEFRRYSVSTWKASTTDAEKSGDSSCIKKALYLPPRSMLLL 373
Query: 216 SGDARYLWKHEINRKPGAQQWGGRELEQQIRTSITLRKLLPSP 258
SG+ARY W H I + R S TLRK+ P
Sbjct: 374 SGEARYAWNHYIPHHKIDKVKDKVIRRSSRRVSFTLRKVRNHP 416
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,731,572
Number of extensions: 239174
Number of successful extensions: 420
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 413
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 163
Effective length of database: 8,474,633
Effective search space: 1381365179
Effective search space used: 1381365179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)