FiT-DB / Search/ Help/ Sample detail

Os11g0654800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.03 (0.266) R2 : 0.355
β1 : -3.87 (0.809) R2dD : 2.53 R2D : -9.76
β2 : -- (--) R2dC : -- R2C : --
β3 : -68.6 (12.4) R2dE : 277 R2E : -266
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -203 (37.6) R2dD*E : 259 R2D*E : -269
γ1 : 0.35 (0.0548) R2dN8 : 0.0766 R2N8 : -5.78
σ : 0.477
deviance : 104.7
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.064
memory length : 1149
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11
open length of G : 1.02

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.71 0.46 8.03 -3.87 0.391 -68.6 -0.364 -203 0.336 8.45 1.063 1145 11 1.02
129.84 0.535 9.44 0.721 0.375 -0.502 -0.731 -- 0.412 9.58 3.179 15 9.88 3.88
96.02 0.456 8.03 -3.9 0.389 -68.6 -- -203 0.335 8.11 1.074 1154 11 1.02
128.18 0.527 9.44 0.717 0.408 -0.783 -- -- 0.405 8.98 6.659 29 9.88 3.78
104.7 0.477 8.03 -3.87 -- -68.6 -- -203 0.35 -- 1.064 1149 11 1.02
130.09 0.535 9.44 0.726 0.374 -- -0.702 -- 0.414 9.51 -- -- -- --
131.21 0.536 9.44 0.696 0.403 -- -- -- 0.41 8.44 -- -- -- --
137.97 0.547 9.45 0.715 -- -0.752 -- -- 0.392 -- 6.063 29 9.85 3.81
140.48 0.552 9.44 -- 0.399 -0.976 -- -- 0.399 8.39 5.821 29 9.85 3.75
140.29 0.553 9.45 0.698 -- -- -- -- 0.414 -- -- -- -- --
143.97 0.561 9.46 -- 0.407 -- -- -- 0.332 8.31 -- -- -- --
150.34 0.571 9.45 -- -- -0.829 -- -- 0.395 -- 5.521 29 9.83 3.8
153.14 0.578 9.47 -- -- -- -- -- 0.336 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 102.83 radiation 1.0 1440 < th dose independent rect. 11 1
2 102.83 radiation 1.0 1440 < th dose dependent rect. 11 1
3 103.13 radiation 1.0 1440 < th dose independent rect. 9 4
4 103.13 radiation 1.0 1440 < th dose dependent rect. 9 4
27 104.28 radiation 1.0 1440 > th dose independent rect. 13 1
32 104.83 radiation 1.0 1440 > th dose independent rect. 11 1
33 105.10 radiation 1.0 1440 > th dose independent rect. 11 3
36 105.17 radiation 1.0 1440 > th dose independent rect. 9 5
48 105.76 wind 1.0 270 < th dose independent rect. 23 1
71 107.58 humidity 90.0 720 > th dose dependent rect. 20 1
75 107.98 wind 1.0 270 < th dose dependent rect. 23 2
76 107.99 humidity 60.0 14400 > th dose independent rect. 24 8
77 108.04 humidity 80.0 1440 < th dose independent rect. 6 8
80 108.07 humidity 50.0 720 > th dose dependent rect. 10 17
85 108.19 humidity 80.0 1440 < th dose independent rect. 2 12
87 108.25 humidity 50.0 720 > th dose dependent sin 18 NA
101 108.65 atmosphere 1005.0 720 < th dose independent rect. 19 5
106 108.71 humidity 50.0 720 > th dose dependent rect. 7 16
139 109.32 humidity 70.0 720 > th dose independent rect. 15 4
145 109.39 humidity 90.0 720 > th dose dependent rect. 20 3
148 109.43 humidity 50.0 720 > th dose dependent rect. 15 5
153 109.48 humidity 50.0 720 > th dose dependent rect. 15 7
155 109.50 humidity 70.0 720 > th dose independent rect. 16 2
183 109.73 radiation 1.0 720 < th dose independent rect. 9 10
190 109.80 humidity 60.0 14400 > th dose independent rect. 4 4
197 109.89 humidity 80.0 1440 < th dose independent sin 3 NA
217 110.02 wind 7.0 4320 > th dose independent rect. 15 4
233 110.09 wind 7.0 4320 < th dose independent rect. 17 2
245 110.14 radiation 10.0 720 < th dose dependent rect. 14 13
246 110.16 atmosphere 1005.0 720 > th dose independent rect. 19 6
249 110.17 atmosphere 1005.0 720 < th dose independent rect. 21 2
262 110.25 wind 7.0 4320 > th dose independent rect. 17 2
263 110.25 wind 7.0 4320 < th dose independent rect. 15 4
274 110.28 humidity 80.0 1440 > th dose independent rect. 2 13
277 110.30 humidity 70.0 720 > th dose independent sin 18 NA
285 110.32 radiation 1.0 720 < th dose independent rect. 13 6
291 110.34 humidity 80.0 1440 > th dose independent rect. 6 9
301 110.39 humidity 80.0 1440 > th dose independent rect. 9 5
321 110.47 radiation 10.0 720 < th dose independent rect. 16 1
350 110.62 humidity 70.0 720 > th dose independent rect. 14 14
364 110.68 wind 1.0 90 < th dose independent rect. 21 5
371 110.73 humidity 80.0 1440 > th dose independent rect. 11 2
378 110.76 radiation 10.0 720 < th dose dependent sin 16 NA
402 110.85 radiation 1.0 720 < th dose independent rect. 9 18
413 110.89 humidity 80.0 1440 < th dose independent rect. 11 2
422 110.91 radiation 1.0 720 < th dose dependent rect. 7 12
434 110.96 wind 1.0 90 < th dose independent rect. 17 9
454 111.03 humidity 60.0 14400 > th dose independent rect. 21 11
490 111.18 radiation 1.0 720 < th dose independent rect. 13 14
501 111.22 radiation 1.0 720 < th dose independent sin 20 NA
534 111.37 humidity 80.0 1440 > th dose independent sin 3 NA
547 111.41 radiation 1.0 1440 > th dose independent rect. 9 1
555 111.42 humidity 70.0 10 > th dose dependent rect. 8 20
573 111.49 radiation 10.0 720 < th dose dependent rect. 9 19
582 111.53 humidity 70.0 720 > th dose independent rect. 7 15
591 111.58 atmosphere 1005.0 270 < th dose independent rect. 21 6
610 111.63 precipitation 0.1 270 > th dose independent rect. 2 2
611 111.63 precipitation 0.1 270 > th dose dependent rect. 2 2
715 111.99 wind 1.0 90 > th dose independent sin 17 NA
738 112.08 humidity 60.0 14400 < th dose independent rect. 6 1
740 112.08 humidity 60.0 14400 < th dose independent rect. 20 1
742 112.08 radiation 20.0 14400 > th dose independent rect. 17 1
794 112.08 humidity 60.0 14400 < th dose dependent rect. 6 1
796 112.08 humidity 60.0 14400 < th dose dependent rect. 20 1
798 112.08 radiation 20.0 14400 > th dose dependent rect. 17 1
867 112.13 humidity 90.0 270 > th dose dependent sin 18 NA
898 112.23 radiation 10.0 720 < th dose dependent rect. 14 9
913 112.26 humidity 70.0 10 > th dose dependent rect. 8 22
948 112.39 wind 5.0 4320 > th dose dependent rect. 18 1
956 112.42 humidity 90.0 270 > th dose dependent rect. 11 15
961 112.44 humidity 90.0 270 > th dose dependent rect. 16 10