BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0654800 Os11g0654800|AK119407
         (812 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G50950.2  | chr3:18936127-18938685 FORWARD LENGTH=853           59   1e-08

>AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853
          Length = 852

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 105/241 (43%), Gaps = 49/241 (20%)

Query: 254 YSKLPTHCKSCLQYLAAMGEEDKINRACLVRRWVAEGLLPLRVVEPPLTTTMEEAGELCF 313
           Y +LP+H KSC+  L+   E+  I +  LV  W+ EG +  R        +  E+GE CF
Sbjct: 408 YDELPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWRN-----GRSATESGEDCF 462

Query: 314 KELVFRGFLLPAPSPTDHPQDDDVAVGTCSLNLKSCVVDNAVKKFIPDISKSDNFVVDLP 373
             L  R  +             +V   T S  + +C + + V+  + DI+K D+F    P
Sbjct: 463 SGLTNRCLI-------------EVVDKTYSGTIITCKIHDMVRDLVIDIAKKDSF--SNP 507

Query: 374 THLQL------------QLKIRHMVRSTFPATASAEEKQQPQQQLNPMDGMVKLLKELPE 421
             L              Q+K+ H +R     T + E        +N ++    L K+  +
Sbjct: 508 EGLNCRHLGISGNFDEKQIKVNHKLRGVVSTTKTGE--------VNKLNS--DLAKKFTD 557

Query: 422 EYRLNVIDLGGCQRLEKSHLKSIC-KVTSLKY---LSLRNTD-VSSLPKKMEDLWQLETL 476
              L V+D+   + +  + L  I  ++ SL++   LSL NT  +   P+ MEDL  L+ L
Sbjct: 558 CKYLRVLDIS--KSIFDAPLSEILDEIASLQHLACLSLSNTHPLIQFPRSMEDLHNLQIL 615

Query: 477 D 477
           D
Sbjct: 616 D 616



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 16,450,540
Number of extensions: 671823
Number of successful extensions: 1893
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1905
Number of HSP's successfully gapped: 2
Length of query: 812
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 705
Effective length of database: 8,173,057
Effective search space: 5762005185
Effective search space used: 5762005185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 116 (49.3 bits)