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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0653300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0492) R2 : 0.136
β1 : -0.792 (0.181) R2dD : 0.0382 R2D : 0.0341
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.58 (0.666) R2dE : 0.0898 R2E : 0.0752
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.245 (0.105) R2dN8 : 0.0154 R2N8 : 0.0158
σ : 0.921
deviance : 390.97
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.5001
memory length : 80
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 13.1
open length of G : 7.73

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
375.78 0.911 3.27 -0.757 0.435 1.57 -0.794 13.2 0.23 6.36 0.6262 80 13.1 7.78
378.6 0.906 3.28 -0.752 0.444 4.63 -0.916 -- 0.228 6.25 0.5032 80 13.1 7.75
376.27 0.903 3.26 -0.766 0.43 1.62 -- 13.4 0.235 6.28 0.6 82 13 7.78
380.69 0.909 3.28 -0.786 0.435 4.76 -- -- 0.243 6.32 0.5001 80 13.1 7.73
385.82 0.915 3.27 -0.755 -- 1.21 -- 14.4 0.236 -- 0.6 83 13 7.79
420.71 0.962 3.29 -0.72 0.38 -- -1.17 -- 0.212 6.3 -- -- -- --
424.11 0.964 3.28 -0.734 0.375 -- -- -- 0.216 6.36 -- -- -- --
390.97 0.921 3.28 -0.792 -- 4.58 -- -- 0.245 -- 0.5001 80 13.1 7.73
398.04 0.929 3.27 -- 0.39 4.6 -- -- 0.295 6.31 0.5245 80 13.1 7.73
431.41 0.971 3.29 -0.724 -- -- -- -- 0.224 -- -- -- -- --
438.32 0.979 3.27 -- 0.365 -- -- -- 0.298 6.47 -- -- -- --
407.65 0.94 3.27 -- -- 4.41 -- -- 0.296 -- 0.5112 83 13.1 7.73
445.25 0.985 3.27 -- -- -- -- -- 0.305 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 387.53 wind 1.0 90 < th dose dependent rect. 13 8
3 388.71 wind 1.0 90 < th dose independent rect. 13 8
5 390.42 temperature 25.0 720 > th dose independent rect. 21 1
6 391.77 atmosphere 1000.0 90 < th dose independent rect. 1 10
7 391.85 atmosphere 1000.0 90 < th dose independent rect. 3 8
9 391.90 radiation 40.0 30 > th dose dependent rect. 9 1
28 391.95 atmosphere 1000.0 90 < th dose independent rect. 5 6
31 392.02 atmosphere 1000.0 10 < th dose independent rect. 24 11
33 392.19 atmosphere 1000.0 90 < th dose independent rect. 7 4
42 392.37 atmosphere 1000.0 10 < th dose independent rect. 2 9
45 392.42 atmosphere 1000.0 10 < th dose independent rect. 4 7
67 392.72 atmosphere 1000.0 270 < th dose independent rect. 6 1
74 392.75 atmosphere 1000.0 10 < th dose independent rect. 8 2
79 392.82 atmosphere 1000.0 90 < th dose independent rect. 8 1
91 393.21 temperature 25.0 720 > th dose dependent rect. 21 1
116 393.61 temperature 30.0 14400 > th dose independent rect. 18 1
131 393.88 temperature 30.0 14400 < th dose independent rect. 18 11
132 393.91 temperature 30.0 14400 < th dose independent rect. 18 13
133 393.96 temperature 30.0 14400 < th dose independent rect. 18 6
134 393.99 temperature 30.0 14400 < th dose independent rect. 18 4
135 394.01 temperature 30.0 14400 < th dose independent rect. 18 9
140 394.14 temperature 30.0 14400 < th dose independent rect. 18 2
149 394.31 atmosphere 1000.0 90 < th dose dependent rect. 9 1
164 394.81 atmosphere 1000.0 30 < th dose dependent rect. 6 5
168 394.93 temperature 30.0 14400 > th dose dependent rect. 18 1
184 394.95 atmosphere 1000.0 270 < th dose dependent rect. 6 1
185 394.95 atmosphere 1000.0 270 < th dose dependent rect. 5 3
199 395.30 atmosphere 1000.0 30 < th dose dependent rect. 4 7
211 395.58 precipitation 0.1 43200 > th dose independent sin 1 NA
212 395.59 precipitation 0.1 43200 < th dose independent sin 1 NA
213 395.59 precipitation 0.1 43200 < th dose dependent sin 1 NA
233 395.61 precipitation 0.1 43200 > th dose independent rect. 5 13
234 395.62 precipitation 0.1 43200 < th dose independent rect. 5 13
235 395.62 precipitation 0.1 43200 < th dose dependent rect. 5 13
237 395.66 atmosphere 1000.0 30 < th dose dependent rect. 24 11
241 395.77 atmosphere 1000.0 30 < th dose dependent rect. 2 9
242 395.78 precipitation 0.1 43200 > th dose dependent sin 2 NA
243 395.80 precipitation 0.1 43200 > th dose dependent rect. 7 7
245 395.82 precipitation 0.1 43200 < th dose independent rect. 20 17
246 395.82 precipitation 0.1 43200 < th dose dependent rect. 20 17
247 395.83 precipitation 0.1 43200 > th dose independent rect. 20 17
256 395.91 precipitation 0.1 43200 > th dose independent rect. 3 15
258 395.95 precipitation 0.1 43200 < th dose independent rect. 3 15
272 395.95 precipitation 0.1 43200 < th dose dependent rect. 3 15
291 396.05 atmosphere 1000.0 720 < th dose dependent rect. 22 4
294 396.11 precipitation 0.1 43200 > th dose dependent rect. 4 14
298 396.19 precipitation 0.1 43200 > th dose independent rect. 6 11
320 396.22 precipitation 0.1 43200 < th dose independent rect. 6 11
321 396.22 precipitation 0.1 43200 < th dose dependent rect. 6 11
322 396.24 precipitation 0.1 43200 > th dose independent rect. 8 6
335 396.34 precipitation 0.1 43200 > th dose dependent rect. 5 12
336 396.34 precipitation 0.1 43200 > th dose dependent rect. 20 15
344 396.38 precipitation 0.1 43200 < th dose independent rect. 8 6
345 396.38 precipitation 0.1 43200 < th dose dependent rect. 8 6
370 396.53 atmosphere 1000.0 720 < th dose dependent rect. 23 2
424 396.87 wind 1.0 10 < th dose independent rect. 12 3
430 396.90 wind 1.0 10 < th dose dependent rect. 12 2
448 396.99 wind 1.0 10 < th dose independent rect. 14 4
452 396.99 wind 1.0 90 < th dose independent rect. 9 12
462 397.01 wind 1.0 10 < th dose dependent rect. 14 4
472 397.05 wind 1.0 90 < th dose dependent rect. 13 1
565 397.29 precipitation 0.1 43200 > th dose independent rect. 7 9
568 397.30 precipitation 0.1 43200 < th dose independent rect. 7 9
570 397.30 precipitation 0.1 43200 < th dose dependent rect. 7 9
572 397.32 wind 1.0 90 < th dose independent rect. 13 1
601 397.43 temperature 25.0 14400 > th dose dependent rect. 4 1
609 397.50 wind 1.0 30 < th dose dependent rect. 9 6
662 397.60 temperature 25.0 10 > th dose independent rect. 23 10
787 397.96 precipitation 0.1 43200 > th dose independent sin 9 NA
788 397.96 precipitation 0.1 43200 < th dose independent sin 9 NA
790 397.96 precipitation 0.1 43200 < th dose dependent sin 9 NA
807 398.07 temperature 30.0 14400 > th dose dependent sin 11 NA
862 398.25 atmosphere 1000.0 720 < th dose independent rect. 22 4
877 398.28 precipitation 0.1 43200 > th dose dependent sin 8 NA
884 398.31 temperature 25.0 14400 > th dose independent rect. 4 1
889 398.32 atmosphere 1000.0 720 < th dose independent rect. 23 2
890 398.33 temperature 30.0 14400 > th dose independent sin 10 NA
900 398.36 radiation 40.0 90 > th dose independent rect. 9 1
913 398.38 precipitation 0.1 43200 > th dose independent rect. 21 10
923 398.40 temperature 30.0 14400 < th dose independent sin 10 NA
946 398.41 temperature 30.0 14400 > th dose independent rect. 17 19
953 398.44 precipitation 0.1 43200 < th dose independent rect. 21 10
956 398.44 precipitation 0.1 43200 < th dose dependent rect. 21 10
990 398.53 temperature 25.0 14400 > th dose independent rect. 4 3
998 398.55 temperature 30.0 14400 < th dose independent rect. 2 7