BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0653300 Os11g0653300|AK119392
         (848 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G50950.2  | chr3:18936127-18938685 FORWARD LENGTH=853           52   1e-06

>AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853
          Length = 852

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 120/299 (40%), Gaps = 47/299 (15%)

Query: 245 ENLSNKLREGEDVAKQVM---LFCYSKLSVHYKSCLQYLITFELEESISRTSLVRRWLAE 301
           E+  ++LR        VM      Y +L  H KSC+  L  +  +  I +  LV  W+ E
Sbjct: 384 EHFQDELRGNTSETDNVMSSLQLSYDELPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGE 443

Query: 302 GLVLNDQQQHGIDDDESMEEAGERCFDDLLFRGFLSPAPAHRFPRTGGLKLKCCVLDASV 361
           G V+         +  S  E+GE CF  L  R  +         +T    +  C +   V
Sbjct: 444 GFVM-------WRNGRSATESGEDCFSGLTNRCLIEVV-----DKTYSGTIITCKIHDMV 491

Query: 362 KTFIYDMSTSENFLDDLPTHLRHQINIRKTARRRELPQKQHQHKLRWTQSTIC------- 414
           +  + D++  ++F +    + RH + I      +++   +  HKLR   ST         
Sbjct: 492 RDLVIDIAKKDSFSNPEGLNCRH-LGISGNFDEKQI---KVNHKLRGVVSTTKTGEVNKL 547

Query: 415 ----------CCYCRVPRIMKATTADAGGSNINDPLLPLHHPMDEIVTLLKTLP-PEYRL 463
                     C Y RV  I K+   DA  S I D +  L H     ++L  T P  ++  
Sbjct: 548 NSDLAKKFTDCKYLRVLDISKS-IFDAPLSEILDEIASLQHLA--CLSLSNTHPLIQFPR 604

Query: 464 NVLDLGGCLGLKMSHLKNICKLVPSL----KYLSLRKTNVSQL---PKKMNRLLHLETL 515
           ++ DL     L  S+ +N+ +L P +    K L L  TN   L   PK +  L+ LE L
Sbjct: 605 SMEDLHNLQILDASYCQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVL 663



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,635,758
Number of extensions: 735780
Number of successful extensions: 2395
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2402
Number of HSP's successfully gapped: 2
Length of query: 848
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 741
Effective length of database: 8,173,057
Effective search space: 6056235237
Effective search space used: 6056235237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 116 (49.3 bits)