Os11g0647000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0647000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 195.43 | 0.657 | 3.55 | 1.59 | 0.328 | -0.951 | 1.15 | -3.46 | -0.515 | 15.6 | 30.7 | 278 | -- | -- |
| 204.98 | 0.667 | 3.61 | 1.02 | 0.364 | -0.98 | 2.05 | -- | -0.639 | 15.9 | 87.91 | 252 | -- | -- |
| 198.64 | 0.656 | 3.53 | 1.73 | 0.294 | -0.991 | -- | -4.15 | -0.471 | 15.9 | 30.64 | 255 | -- | -- |
| 217.14 | 0.686 | 3.61 | 1.01 | 0.338 | -1.1 | -- | -- | -0.647 | 15.4 | 91.68 | 277 | -- | -- |
| 202.3 | 0.662 | 3.52 | 1.71 | -- | -1.24 | -- | -4.49 | -0.504 | -- | 30.9 | 238 | -- | -- |
| 215.35 | 0.688 | 3.59 | 1.22 | 0.632 | -- | 2.26 | -- | -0.502 | 16.1 | -- | -- | -- | -- |
| 229.88 | 0.71 | 3.58 | 1.25 | 0.645 | -- | -- | -- | -0.489 | 16.1 | -- | -- | -- | -- |
| 221.36 | 0.693 | 3.62 | 0.928 | -- | -1.46 | -- | -- | -0.699 | -- | 66.57 | 198 | -- | -- |
| 241.26 | 0.723 | 3.65 | -- | 0.183 | -1.59 | -- | -- | -0.816 | 14.8 | 98.65 | 256 | -- | -- |
| 252.52 | 0.743 | 3.58 | 1.22 | -- | -- | -- | -- | -0.506 | -- | -- | -- | -- | -- |
| 270.8 | 0.77 | 3.61 | -- | 0.621 | -- | -- | -- | -0.628 | 16.1 | -- | -- | -- | -- |
| 242.55 | 0.725 | 3.65 | -- | -- | -1.76 | -- | -- | -0.837 | -- | 72.05 | 218 | -- | -- |
| 291.77 | 0.797 | 3.61 | -- | -- | -- | -- | -- | -0.642 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 188.88 | temperature | 25 | 270 | < th | dose dependent | sin | 22 | NA |
| 2 | 189.71 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 25 | 193.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 22 |
| 51 | 195.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 57 | 195.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 70 | 195.50 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 82 | 195.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 97 | 195.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 114 | 196.09 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 120 | 196.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 16 |
| 128 | 196.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 143 | 196.36 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 150 | 196.42 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 159 | 196.53 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 163 | 196.57 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 198 | 196.79 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 16 |
| 230 | 196.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 235 | 196.95 | temperature | 25 | 270 | < th | dose independent | sin | 20 | NA |
| 248 | 197.04 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 21 |
| 268 | 197.18 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 21 |
| 279 | 197.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 4 |
| 288 | 197.31 | temperature | 25 | 270 | > th | dose independent | sin | 20 | NA |
| 313 | 197.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 314 | 197.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 332 | 197.55 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 379 | 197.83 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 22 |
| 436 | 198.11 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 20 |
| 451 | 198.17 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 14 |
| 478 | 198.31 | temperature | 25 | 10 | < th | dose independent | rect. | 8 | 21 |
| 491 | 198.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 502 | 198.39 | temperature | 15 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 504 | 198.40 | temperature | 15 | 270 | > th | dose dependent | sin | 23 | NA |
| 512 | 198.43 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 23 |
| 523 | 198.46 | temperature | 25 | 10 | < th | dose independent | rect. | 15 | 22 |
| 557 | 198.56 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 16 |
| 576 | 198.61 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 594 | 198.65 | temperature | 25 | 10 | < th | dose independent | sin | 18 | NA |
| 608 | 198.68 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 22 |
| 619 | 198.70 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 10 |
| 667 | 198.82 | temperature | 30 | 10 | < th | dose dependent | sin | 18 | NA |
| 744 | 198.97 | temperature | 25 | 10 | < th | dose independent | rect. | 8 | 16 |
| 780 | 199.06 | temperature | 25 | 10 | < th | dose independent | rect. | 6 | 23 |
| 805 | 199.12 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 827 | 199.17 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 828 | 199.17 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 877 | 199.27 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 881 | 199.29 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 908 | 199.34 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 959 | 199.42 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 988 | 199.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |