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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0646300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NB-ARC domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.82 (--) R2 : 0.0271
β1 : 0.266 (--) R2dD : 0.0188 R2D : 0.00223
β2 : 0.0425 (--) R2dC : 0.000349 R2C : -0.00956
β3 : -0.131 (--) R2dE : -- R2E : --
β4 : -0.149 (--) R2dD*C : 0.00105 R2D*C : -0.00924
β5 : 1.62 (--) R2dD*E : -- R2D*E : --
γ1 : 0.133 (--) R2dN8 : 0.023 R2N8 : 0.00659
σ : 0.454
deviance : 93.23
__
_____
C
peak time of C : 4.52
E
wheather : humidity
threshold : 1
memory length : 6
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
93.23 0.454 2.82 0.266 0.0425 -0.131 -0.149 1.62 0.133 4.52 1 6 -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
95.32 0.458 2.83 0.264 0.0225 -- -0.27 -- 0.131 6.17 -- -- -- --
95.48 0.458 2.83 0.26 0.0262 -- -- -- 0.131 3.82 -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
95.52 0.457 2.83 0.261 -- -- -- -- 0.132 -- -- -- -- --
97.27 0.461 2.84 -- 0.0313 -- -- -- 0.102 3.73 -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
97.32 0.46 2.84 -- -- -- -- -- 0.103 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.54 wind 1.0 270 < th dose dependent rect. 21 1
7 85.87 wind 1.0 270 < th dose independent rect. 21 1
22 88.94 humidity 50.0 10 < th dose independent rect. 11 5
60 89.03 humidity 50.0 10 < th dose dependent rect. 12 4
62 89.07 wind 1.0 270 < th dose dependent rect. 11 11
67 89.43 humidity 50.0 10 < th dose independent rect. 15 1
68 89.43 humidity 50.0 10 < th dose dependent rect. 15 1
203 90.09 temperature 30.0 10 > th dose dependent rect. 15 1
210 90.35 radiation 10.0 10 < th dose independent rect. 8 1
219 90.58 wind 1.0 720 > th dose independent rect. 15 8
220 90.60 humidity 50.0 10 < th dose independent sin 6 NA
225 90.80 humidity 50.0 720 > th dose independent rect. 23 16
227 90.82 temperature 20.0 30 > th dose dependent rect. 2 1
229 90.87 temperature 20.0 30 > th dose independent rect. 2 1
230 90.88 atmosphere 1005.0 30 > th dose independent rect. 2 1
234 90.91 atmosphere 1005.0 30 > th dose dependent rect. 2 1
238 90.96 wind 3.0 30 < th dose independent rect. 2 1
242 90.98 humidity 80.0 30 > th dose dependent rect. 2 1
243 90.99 humidity 80.0 30 > th dose independent rect. 2 1
244 90.99 wind 3.0 30 < th dose dependent rect. 2 1
259 91.04 wind 1.0 43200 > th dose independent rect. 21 1
260 91.05 wind 9.0 30 < th dose independent rect. 2 1
261 91.05 temperature 10.0 30 > th dose independent rect. 2 1
263 91.05 temperature 30.0 30 < th dose independent rect. 2 1
264 91.05 humidity 50.0 30 > th dose independent rect. 2 1
268 91.05 atmosphere 1010.0 30 < th dose independent rect. 2 1
270 91.05 radiation 1.0 30 < th dose independent rect. 2 1
275 91.05 precipitation 0.1 30 < th dose independent rect. 2 1
276 91.05 temperature 10.0 30 > th dose independent rect. 3 23
277 91.05 radiation 1.0 30 < th dose dependent rect. 2 1
282 91.05 precipitation 0.1 30 < th dose dependent rect. 2 1
287 91.07 wind 1.0 43200 < th dose independent rect. 21 1
289 91.11 radiation 10.0 90 < th dose dependent rect. 7 1
300 91.29 humidity 50.0 10 > th dose independent rect. 23 23
309 91.33 atmosphere 1015.0 30 < th dose dependent rect. 2 1
311 91.38 wind 1.0 1440 > th dose independent rect. 21 1
314 91.42 wind 1.0 30 > th dose independent rect. 2 1
316 91.43 temperature 30.0 30 < th dose dependent rect. 2 1
320 91.45 wind 1.0 270 < th dose independent rect. 11 11
323 91.46 wind 1.0 43200 < th dose dependent rect. 20 2
336 91.63 humidity 50.0 720 < th dose dependent rect. 13 1
341 91.69 temperature 20.0 30 > th dose independent rect. 11 16
345 91.70 humidity 50.0 720 > th dose independent rect. 7 8
364 91.74 precipitation 0.1 4320 < th dose independent rect. 23 1
365 91.74 humidity 50.0 720 > th dose independent rect. 11 6
366 91.74 precipitation 0.1 4320 < th dose dependent rect. 23 1
379 91.83 wind 9.0 30 < th dose independent rect. 3 23
393 91.91 wind 1.0 270 < th dose dependent sin 17 NA
426 91.96 temperature 20.0 30 > th dose independent rect. 22 5
428 91.96 radiation 1.0 43200 < th dose dependent rect. 23 1
433 91.99 humidity 50.0 720 > th dose independent rect. 20 21
468 92.09 wind 1.0 720 < th dose independent rect. 18 1
474 92.14 humidity 50.0 720 > th dose independent rect. 5 18
479 92.16 humidity 50.0 720 > th dose independent rect. 5 12
491 92.22 radiation 20.0 14400 < th dose dependent rect. 23 1
509 92.30 humidity 50.0 720 < th dose dependent rect. 15 1
517 92.34 temperature 30.0 10 > th dose independent rect. 15 1
519 92.34 humidity 50.0 10 > th dose independent rect. 3 19
527 92.36 humidity 50.0 10 > th dose independent rect. 3 23
530 92.37 temperature 20.0 30 > th dose independent rect. 11 13
537 92.39 temperature 20.0 90 > th dose independent rect. 22 1
538 92.39 humidity 50.0 10 > th dose independent rect. 12 10
554 92.44 wind 3.0 30 < th dose dependent rect. 22 1
558 92.46 humidity 50.0 720 < th dose independent rect. 13 1
559 92.46 humidity 50.0 720 < th dose independent rect. 10 4
580 92.47 humidity 50.0 720 > th dose independent rect. 3 8
602 92.51 wind 7.0 1440 < th dose independent rect. 23 1
603 92.51 atmosphere 1005.0 30 > th dose independent rect. 22 1
606 92.51 humidity 50.0 720 > th dose independent rect. 11 22
612 92.52 wind 3.0 90 > th dose independent rect. 6 1
616 92.52 atmosphere 1005.0 30 > th dose dependent rect. 22 1
626 92.54 wind 3.0 30 < th dose independent rect. 22 1
632 92.55 temperature 10.0 1440 > th dose independent rect. 23 1
635 92.55 temperature 30.0 1440 < th dose independent rect. 23 1
639 92.55 humidity 50.0 1440 > th dose independent rect. 23 1
650 92.55 atmosphere 995.0 1440 > th dose independent rect. 23 1
651 92.55 radiation 1.0 1440 < th dose independent rect. 23 1
690 92.55 temperature 10.0 1440 > th dose independent rect. 24 23
701 92.56 humidity 50.0 720 < th dose independent sin 7 NA
713 92.58 humidity 80.0 30 > th dose independent rect. 22 1
714 92.58 precipitation 0.1 30 < th dose independent rect. 22 1
717 92.58 precipitation 0.1 30 < th dose dependent rect. 22 1
724 92.59 wind 3.0 30 < th dose independent rect. 21 6
727 92.59 temperature 30.0 720 < th dose independent rect. 14 9
735 92.61 atmosphere 1000.0 30 > th dose independent rect. 11 16
745 92.62 temperature 10.0 30 > th dose independent rect. 22 1
747 92.62 temperature 30.0 30 < th dose independent rect. 22 1
748 92.62 humidity 50.0 30 > th dose independent rect. 22 1
752 92.62 atmosphere 1010.0 30 < th dose independent rect. 22 1
754 92.62 radiation 1.0 30 < th dose independent rect. 22 1
762 92.62 humidity 50.0 10 > th dose independent rect. 9 13
764 92.62 temperature 10.0 30 > th dose independent rect. 23 23
765 92.62 temperature 10.0 30 > th dose dependent rect. 22 1
767 92.62 radiation 1.0 30 < th dose dependent rect. 22 1
774 92.63 wind 1.0 30 > th dose independent rect. 22 1
778 92.63 humidity 50.0 30 > th dose dependent rect. 22 1
781 92.64 humidity 90.0 30 < th dose independent rect. 22 1
787 92.64 wind 3.0 30 > th dose dependent rect. 6 3
794 92.65 temperature 30.0 30 < th dose dependent rect. 22 1
798 92.65 wind 9.0 30 < th dose dependent rect. 11 16
799 92.66 precipitation 0.1 4320 > th dose independent rect. 23 1
804 92.66 precipitation 0.1 4320 > th dose dependent rect. 23 1
876 92.71 humidity 90.0 30 < th dose dependent rect. 22 1
878 92.71 precipitation 0.1 43200 > th dose dependent rect. 2 1
909 92.74 temperature 20.0 270 > th dose independent rect. 8 16
919 92.75 wind 1.0 1440 > th dose independent rect. 16 1
925 92.75 humidity 50.0 720 > th dose independent rect. 11 14
928 92.75 wind 9.0 30 < th dose independent rect. 23 23
936 92.76 humidity 50.0 720 > th dose independent sin 7 NA
947 92.76 atmosphere 1015.0 30 < th dose dependent rect. 22 1
958 92.77 humidity 50.0 10 < th dose dependent sin 5 NA
960 92.77 wind 1.0 720 < th dose dependent rect. 16 1
981 92.78 wind 1.0 30 > th dose dependent rect. 22 1
996 92.80 humidity 50.0 720 < th dose independent rect. 16 22