BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0646300 Os11g0646300|Os11g0646300
(1441 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853 73 1e-12
AT5G35450.1 | chr5:13667809-13670685 FORWARD LENGTH=902 53 1e-06
>AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853
Length = 852
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 138/347 (39%), Gaps = 53/347 (15%)
Query: 490 TEIARRVFNNYYSRQGGRFDFAVWVNAEEHSHSTARLRSILXXXXXXXXXXXXXXXXHPX 549
T IA+ VFN+ RF+ +WV+ + +RSIL
Sbjct: 196 TTIAQEVFNDKEIEH--RFERRIWVSVSQTFTEEQIMRSIL------------------- 234
Query: 550 XXXRDKKDG--GDETTRLQQEILKHLTGKKFLIFLADHQDE--TPWTQILPALPTDSTNE 605
R+ D GD+ L ++I ++L GK++LI + D D+ + W +I LP
Sbjct: 235 ---RNLGDASVGDDIGTLLRKIQQYLLGKRYLIVMDDVWDKNLSWWDKIYQGLPRGQG-- 289
Query: 606 SAVILSPLVQQAYQYVGWYVLSLFFLLKHSRYRVYFYSHLVATRNKAKELLRVGADQHKG 665
+VI++ + + V +R L++ N V + G
Sbjct: 290 GSVIVTTRSESVAKRV------------QARDDKTHRPELLSPDNSWLLFCNVAFAANDG 337
Query: 666 E----DLHDLVNHILERCRWDSFSSK----MFLHALYANHQRSKPXXXXXXXXXXXFSTV 717
+L D+ I+ +C+ + K + L + H+ + S
Sbjct: 338 TCERPELEDVGKEIVTKCKGLPLTIKAVGGLLLCKDHVYHEWRRIAEHFQDELRGNTSET 397
Query: 718 SNARNMIKFCYDDLHSY-KVCFQYLSIFPLGFKIRRTSLVRRWAAEGLIVGRDGLAATDE 776
N + ++ YD+L S+ K C LS++P I + LV W EG ++ R+G +AT+
Sbjct: 398 DNVMSSLQLSYDELPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWRNGRSATES 457
Query: 777 AERCFDAMIDRGLLLPADNTDNPSGKVKMCTVDPHVFSFIARLHKDD 823
E CF + +R L+ D T SG + C + V + + K D
Sbjct: 458 GEDCFSGLTNRCLIEVVDKT--YSGTIITCKIHDMVRDLVIDIAKKD 502
>AT5G35450.1 | chr5:13667809-13670685 FORWARD LENGTH=902
Length = 901
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 715 STVSNARNMIKFCYDDLHS-YKVCFQYLSIFPLGFKIRRTSLVRRWAAEGLIVGRDGLAA 773
+++++ ++ Y+DL + K CF YL+ FP +KI+ +L WAAEG+ DGL
Sbjct: 397 NSLNSVYRILSLSYEDLPTDLKHCFLYLAHFPEDYKIKTRTLYSYWAAEGIY---DGLTI 453
Query: 774 TDEAERCFDAMIDRGLLLPADNTDNPSGKVKMCTV 808
D E + ++ R L++ + N S ++K+C +
Sbjct: 454 LDSGEDYLEELVRRNLVIAEKS--NLSWRLKLCQM 486
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 29,002,819
Number of extensions: 1170921
Number of successful extensions: 3676
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3697
Number of HSP's successfully gapped: 2
Length of query: 1441
Length of database: 11,106,569
Length adjustment: 111
Effective length of query: 1330
Effective length of database: 8,063,393
Effective search space: 10724312690
Effective search space used: 10724312690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 118 (50.1 bits)