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Os11g0643700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nuclear pore protein 84/107 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.76 (0.0228) R2 : 0.699
β1 : 0.865 (0.0854) R2dD : 0.0761 R2D : 0.149
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.52 (0.0982) R2dE : 0.526 R2E : 0.625
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0827 (0.0516) R2dN8 : 0.00265 R2N8 : 0.0187
σ : 0.419
deviance : 80.98
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C
peak time of C : --
E
wheather : temperature
threshold : 29.4
memory length : 257
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
79.11 0.418 6.76 0.917 0.224 -2.34 0.198 -0.0592 0.11 18 28.73 254 -- --
78.99 0.414 6.76 0.904 0.234 -2.35 0.0652 -- 0.111 18.9 28.92 230 -- --
78.97 0.414 6.76 0.923 0.246 -2.35 -- -0.11 0.109 19.2 28.87 223 -- --
78.99 0.414 6.76 0.903 0.244 -2.35 -- -- 0.111 19.1 28.89 224 -- --
80.96 0.419 6.76 0.897 -- -2.51 -- -0.15 0.0905 -- 29.31 257 -- --
154.27 0.582 6.66 1.5 0.893 -- 0.572 -- 0.602 16.7 -- -- -- --
155.12 0.583 6.65 1.51 0.897 -- -- -- 0.605 16.8 -- -- -- --
80.98 0.419 6.76 0.865 -- -2.52 -- -- 0.0827 -- 29.4 257 -- --
97.91 0.461 6.8 -- 0.168 -2.78 -- -- -0.0762 21.2 28.75 231 -- --
197.71 0.657 6.65 1.47 -- -- -- -- 0.582 -- -- -- -- --
214.93 0.686 6.69 -- 0.87 -- -- -- 0.437 16.8 -- -- -- --
99.01 0.463 6.79 -- -- -2.8 -- -- -0.0746 -- 28.87 262 -- --
254.93 0.745 6.68 -- -- -- -- -- 0.418 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.52 temperature 30 270 < th dose dependent rect. 24 23
2 77.91 temperature 30 270 < th dose dependent rect. 22 23
4 78.60 temperature 30 270 < th dose dependent rect. 20 23
7 80.09 temperature 30 270 < th dose dependent no NA NA
8 80.10 temperature 30 270 < th dose dependent rect. 17 23
13 80.63 temperature 30 270 < th dose dependent rect. 14 23
16 80.80 temperature 15 270 > th dose dependent rect. 16 23
20 81.37 temperature 30 270 < th dose dependent rect. 9 23
36 82.27 temperature 25 1440 < th dose dependent rect. 4 8
63 83.39 temperature 25 1440 < th dose dependent rect. 22 14
67 83.55 temperature 25 1440 < th dose dependent rect. 18 18
76 83.70 temperature 10 270 > th dose dependent rect. 5 23
118 84.33 temperature 25 1440 < th dose dependent sin 5 NA
163 84.92 temperature 30 30 < th dose dependent rect. 11 23
234 85.50 temperature 25 1440 < th dose dependent rect. 6 21
242 85.56 temperature 10 90 > th dose dependent no NA NA
390 86.52 temperature 20 1440 > th dose independent rect. 21 16
416 86.69 temperature 25 1440 < th dose dependent rect. 22 1
476 87.10 temperature 20 1440 > th dose independent sin 8 NA
480 87.12 temperature 20 1440 < th dose independent rect. 21 16
535 87.47 temperature 25 1440 < th dose dependent rect. 18 8
540 87.49 temperature 25 1440 < th dose dependent rect. 17 10
547 87.51 temperature 25 1440 < th dose dependent rect. 17 12
567 87.61 temperature 20 1440 < th dose independent sin 8 NA
590 87.69 temperature 20 1440 > th dose independent rect. 17 13
608 87.74 temperature 10 270 > th dose dependent sin 7 NA
744 88.26 temperature 20 1440 < th dose independent rect. 17 13
770 88.36 temperature 10 1440 > th dose dependent rect. 23 12
901 88.79 temperature 20 1440 > th dose independent rect. 9 22
997 89.06 temperature 30 270 < th dose dependent sin 6 NA
1000 89.07 temperature 20 4320 < th dose independent rect. 18 5