BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0643700 Os11g0643700|J033092H16
         (123 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14120.1  | chr3:4677993-4685455 FORWARD LENGTH=1102           115   4e-27

>AT3G14120.1 | chr3:4677993-4685455 FORWARD LENGTH=1102
          Length = 1101

 Score =  115 bits (289), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 67/83 (80%)

Query: 4    ELNRFQPGVSIEISRLDAWYSDGHGSVESTAAYIIRGLCRRCCLPETILRSMQASIALSE 63
            EL RFQ GV+++ISRLDAWYS   GS+E+ A YI+RGLCRRCCLPE +LRSMQ S++L E
Sbjct: 987  ELTRFQAGVTMDISRLDAWYSSKEGSLETPATYIVRGLCRRCCLPELVLRSMQVSVSLME 1046

Query: 64   AGDSLDHCDKLIELVASSESGIM 86
            +G+  +  D+LIELVAS E+G +
Sbjct: 1047 SGNPPEDHDELIELVASDETGFL 1069



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,812,213
Number of extensions: 52004
Number of successful extensions: 142
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 37
Effective length of database: 8,748,793
Effective search space: 323705341
Effective search space used: 323705341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)