Os11g0641200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, cysteine-containing containing protein.
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Os11g0641200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, cysteine-containing containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.35 | 0.283 | 8 | -0.597 | 0.261 | -0.975 | -0.333 | 0.233 | 1.18 | 6.9 | 24.27 | 759 | -- | -- |
| 36.42 | 0.281 | 8 | -0.573 | 0.266 | -1.01 | -0.336 | -- | 1.18 | 6.83 | 24.1 | 760 | -- | -- |
| 36.55 | 0.282 | 8 | -0.583 | 0.255 | -1 | -- | 0.103 | 1.19 | 7.24 | 24.1 | 794 | -- | -- |
| 36.56 | 0.282 | 8 | -0.569 | 0.253 | -1.02 | -- | -- | 1.19 | 7.27 | 24.1 | 794 | -- | -- |
| 39.36 | 0.292 | 8.01 | -0.604 | -- | -0.95 | -- | 0.24 | 1.19 | -- | 24.4 | 1070 | -- | -- |
| 50.8 | 0.334 | 7.96 | -0.286 | 0.204 | -- | -0.43 | -- | 1.39 | 5.06 | -- | -- | -- | -- |
| 51.25 | 0.335 | 7.95 | -0.285 | 0.203 | -- | -- | -- | 1.39 | 5.33 | -- | -- | -- | -- |
| 39.43 | 0.292 | 8 | -0.567 | -- | -0.983 | -- | -- | 1.19 | -- | 24.36 | 1082 | -- | -- |
| 44 | 0.309 | 7.97 | -- | 0.243 | -0.762 | -- | -- | 1.3 | 7.17 | 24.1 | 732 | -- | -- |
| 53.4 | 0.341 | 7.96 | -0.278 | -- | -- | -- | -- | 1.39 | -- | -- | -- | -- | -- |
| 53.4 | 0.342 | 7.95 | -- | 0.198 | -- | -- | -- | 1.42 | 5.39 | -- | -- | -- | -- |
| 46.67 | 0.318 | 7.98 | -- | -- | -0.728 | -- | -- | 1.31 | -- | 24.1 | 881 | -- | -- |
| 55.44 | 0.348 | 7.95 | -- | -- | -- | -- | -- | 1.42 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 11 | 36.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 29 | 36.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 30 | 36.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 75 | 36.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 87 | 36.62 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 90 | 36.64 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 91 | 36.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 93 | 36.65 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 126 | 36.86 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 132 | 36.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 135 | 36.89 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 183 | 37.08 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 303 | 37.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 372 | 37.81 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 476 | 38.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 514 | 38.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 598 | 38.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 17 |
| 599 | 38.35 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 600 | 38.36 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 649 | 38.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 788 | 38.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 841 | 38.72 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 854 | 38.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 883 | 38.78 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 975 | 38.87 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 21 |