BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0641200 Os11g0641200|J065129I11
(106 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G15475.1 | chr4:8845927-8848701 FORWARD LENGTH=611 128 8e-31
AT2G25490.1 | chr2:10848018-10850275 REVERSE LENGTH=629 52 6e-08
AT5G23340.1 | chr5:7856314-7857983 FORWARD LENGTH=406 48 1e-06
AT5G01720.1 | chr5:267118-270391 REVERSE LENGTH=666 47 2e-06
AT1G80570.2 | chr1:30290661-30292231 FORWARD LENGTH=481 45 5e-06
AT5G25350.1 | chr5:8794842-8796882 REVERSE LENGTH=624 45 5e-06
>AT4G15475.1 | chr4:8845927-8848701 FORWARD LENGTH=611
Length = 610
Score = 128 bits (321), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 74/99 (74%)
Query: 8 QSIGDMALAEIGEGCSQLKDIALSHCPEVTDVGLGHLVRGCLPLQSCQMVYCRRVSSTGI 67
Q+IGDM LAE+GEGC LKD+ LSHC +TD GL HLV+ C L++C MVYC ++S G+
Sbjct: 512 QNIGDMPLAELGEGCPMLKDLVLSHCHHITDNGLNHLVQKCKLLETCHMVYCPGITSAGV 571
Query: 68 ATIVSGCPXXXXXXVEEWKVSERTRRRAGSVLSFLCTGL 106
AT+VS CP +E+WKV+ERT RRAGSV+S+LC L
Sbjct: 572 ATVVSSCPHIKKVLIEKWKVTERTTRRAGSVISYLCMDL 610
Score = 48.5 bits (114), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 2 LVLFNQQSIGDMALAEIGEGCSQLKDIALSHCPEVTDVGLGHLVRGCLPLQSCQMVYCRR 61
L L++ Q D + IG+G +LKD+ LS C V+ GL + GC L+ ++ C
Sbjct: 299 LALYSFQHFTDKGMRAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHN 358
Query: 62 VSSTGIATIVSGCP 75
+ + GI I CP
Sbjct: 359 IGTRGIEAIGKSCP 372
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 2 LVLFNQQSIGDMALAEIGEGCSQLKDIALSHCPEVTDVGLGHLVRGCLPLQSCQMVYCRR 61
L L Q IG+ AL EIG+GC L+ + L C + D+ + + +GC L+ + C
Sbjct: 377 LALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRRCYE 436
Query: 62 VSSTGIATIVSGCP 75
+ + GI +I C
Sbjct: 437 IGNKGIISIGKHCK 450
>AT2G25490.1 | chr2:10848018-10850275 REVERSE LENGTH=629
Length = 628
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 2 LVLFNQQSIGDMALAEIGEGCSQLKDIALSHCPEVTDVGLGHLVRGCLPLQSCQMVYCRR 61
L L+N +I D L EI EGC+QL+ + L+ C +TD GL + + C L + C R
Sbjct: 182 LSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGLVAIAKSCPNLTELTLEACSR 241
Query: 62 VSSTGIATIVSGC 74
+ G+ I C
Sbjct: 242 IGDEGLLAIARSC 254
Score = 46.2 bits (108), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 8 QSIGDMALAEIGEGCSQLKDIALSHCPEVTDVGLGHLVRGCLPLQSCQMVYCRRVSSTGI 67
Q + DM L +G+GC +K +S P ++D GL + L L+S Q+ C RV+ G
Sbjct: 346 QGVTDMGLESVGKGCPNMKKAIISKSPLLSDNGLVSFAKASLSLESLQLEECHRVTQFGF 405
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%)
Query: 6 NQQSIGDMALAEIGEGCSQLKDIALSHCPEVTDVGLGHLVRGCLPLQSCQMVYCRRVSST 65
N + D+ L IG C L ++L + +TD GL + GC L+ ++ C ++
Sbjct: 160 NSAKVSDLGLRSIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDK 219
Query: 66 GIATIVSGCPXXXXXXVE 83
G+ I CP +E
Sbjct: 220 GLVAIAKSCPNLTELTLE 237
>AT5G23340.1 | chr5:7856314-7857983 FORWARD LENGTH=406
Length = 405
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 10 IGDMALAEIGEGCSQLKDIALSHCPEVTDVGLGHLVRGCLPLQSCQMVYCRRVSSTGIAT 69
I D +L + E C L+ + L C +TD GL LV+GC ++S + C V G+++
Sbjct: 163 ITDESLKSLSERCRDLEALGLQGCTNITDSGLADLVKGCRKIKSLDINKCSNVGDAGVSS 222
Query: 70 IVSGCP 75
+ C
Sbjct: 223 VAKACA 228
>AT5G01720.1 | chr5:267118-270391 REVERSE LENGTH=666
Length = 665
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 9 SIGDMALAEIGEGCSQLKDIALSHCPEVTDVGLGHLVRGCLPLQSCQMVYCRRVSSTGIA 68
S+ L IG C+ LK+++LS C VTD GL LV L+ + CR++S I
Sbjct: 315 SVTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDLRKLDITCCRKLSRVSIT 374
Query: 69 TIVSGCPXXXXXXVEEWKVSER 90
I + CP +E + R
Sbjct: 375 QIANSCPLLVSLKMESCSLVSR 396
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 38/62 (61%)
Query: 9 SIGDMALAEIGEGCSQLKDIALSHCPEVTDVGLGHLVRGCLPLQSCQMVYCRRVSSTGIA 68
+I D L+ IG GCS L+++ L +TDVG+ + +GC+ L++ + YC+ ++ +
Sbjct: 443 NITDKGLSYIGMGCSNLRELDLYRSVGITDVGISTIAQGCIHLETINISYCQDITDKSLV 502
Query: 69 TI 70
++
Sbjct: 503 SL 504
>AT1G80570.2 | chr1:30290661-30292231 FORWARD LENGTH=481
Length = 480
Score = 45.4 bits (106), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 8 QSIGDMALAEIGEGCSQLKDIALSHCPEVTDVGLGHLVRGCLPLQSCQMVYCRRVSSTGI 67
+ + D L + C L D+ LS C +TDVG+GHL C L S ++ + R++ G+
Sbjct: 95 KQVDDQGLLVLTTNCHSLTDLTLSFCTFITDVGIGHL-SSCPELSSLKLNFAPRITGCGV 153
Query: 68 ATIVSGC 74
++ GC
Sbjct: 154 LSLAVGC 160
>AT5G25350.1 | chr5:8794842-8796882 REVERSE LENGTH=624
Length = 623
Score = 45.4 bits (106), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 4 LFNQQSIGDMALAEIGEGCSQLKDIALSHCPEVTDVGLGHLVRGCLPLQSCQMVYCRRVS 63
L+N ++ D+ L+EI C ++ + LS CP +TD GL + C+ L + C V
Sbjct: 174 LWNLPAVSDLGLSEIARSCPMIEKLDLSRCPGITDSGLVAIAENCVNLSDLTIDSCSGVG 233
Query: 64 STGIATIVSGC 74
+ G+ I C
Sbjct: 234 NEGLRAIARRC 244
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.138 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,960,038
Number of extensions: 61579
Number of successful extensions: 348
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 20
Length of query: 106
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 31
Effective length of database: 9,050,369
Effective search space: 280561439
Effective search space used: 280561439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)