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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0639100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0185) R2 : 0.00829
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0762 (0.039) R2dN8 : 0.0107 R2N8 : 0.00829
σ : 0.349
deviance : 55.92
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.02 0.345 2.94 0.205 0.00134 0.314 -0.273 1.68 0.0433 20.7 9.096 4441 -- --
55.18 0.346 2.9 0.174 0.0354 0.141 0.299 -- 0.0542 8.53 9.404 6925 -- --
54.26 0.343 2.94 0.214 0.000965 0.318 -- 1.71 0.0423 21.1 9.033 4440 -- --
52.57 0.338 2.94 0.0849 0.0967 0.339 -- -- -0.167 8.33 11.59 5142 -- --
54.26 0.343 2.94 0.214 -- 0.313 -- 1.7 0.043 -- 9.035 4441 -- --
55.31 0.349 2.89 0.0977 0.023 -- 0.273 -- 0.0877 9.57 -- -- -- --
55.57 0.349 2.89 0.109 0.0267 -- -- -- 0.0885 12.3 -- -- -- --
52.51 0.337 2.95 0.0761 -- 0.335 -- -- -0.183 -- 11.57 5142 -- --
52.56 0.338 2.95 -- 0.0456 0.363 -- -- -0.214 8.49 11.5 5142 -- --
55.61 0.348 2.89 0.108 -- -- -- -- 0.0881 -- -- -- -- --
55.88 0.35 2.89 -- 0.0252 -- -- -- 0.0764 12.1 -- -- -- --
52.68 0.338 2.96 -- -- 0.374 -- -- -0.23 -- 11.56 5121 -- --
55.92 0.349 2.9 -- -- -- -- -- 0.0762 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 52.33 humidity 90.0 4320 < th dose dependent rect. 4 1
8 52.61 precipitation 0.1 90 > th dose independent rect. 5 1
9 52.61 precipitation 0.1 90 > th dose dependent rect. 5 1
15 52.85 humidity 80.0 4320 > th dose independent rect. 4 1
16 52.87 humidity 80.0 4320 < th dose independent rect. 4 1
17 52.87 radiation 1.0 43200 < th dose dependent rect. 21 1
19 52.89 wind 9.0 4320 > th dose dependent rect. 13 1
30 52.99 atmosphere 1005.0 30 > th dose dependent rect. 2 1
31 53.00 wind 1.0 30 < th dose independent rect. 2 1
32 53.00 wind 3.0 30 < th dose dependent rect. 2 1
33 53.01 temperature 15.0 30 > th dose dependent rect. 2 1
43 53.03 temperature 20.0 30 > th dose independent rect. 2 1
44 53.03 temperature 25.0 30 < th dose independent rect. 2 1
45 53.03 humidity 80.0 30 > th dose independent rect. 2 1
46 53.03 atmosphere 1005.0 30 > th dose independent rect. 2 1
54 53.05 temperature 10.0 30 > th dose independent rect. 2 1
57 53.05 humidity 50.0 30 > th dose independent rect. 2 1
60 53.05 atmosphere 995.0 30 > th dose independent rect. 2 1
61 53.05 atmosphere 1010.0 30 < th dose independent rect. 2 1
63 53.05 radiation 1.0 30 < th dose independent rect. 2 1
68 53.05 precipitation 0.1 30 < th dose independent rect. 2 1
69 53.05 temperature 10.0 30 > th dose independent rect. 3 23
70 53.05 humidity 50.0 30 > th dose dependent rect. 2 1
73 53.05 radiation 1.0 30 < th dose dependent rect. 2 1
78 53.05 precipitation 0.1 30 < th dose dependent rect. 2 1
86 53.07 temperature 10.0 1440 > th dose independent rect. 21 1
89 53.07 temperature 30.0 1440 < th dose independent rect. 21 1
93 53.07 humidity 50.0 1440 > th dose independent rect. 21 1
99 53.07 atmosphere 995.0 1440 > th dose independent rect. 21 1
100 53.07 radiation 1.0 1440 < th dose independent rect. 21 1
120 53.07 temperature 10.0 1440 > th dose independent rect. 22 23
132 53.08 wind 3.0 30 > th dose independent rect. 20 1
133 53.08 atmosphere 1005.0 30 > th dose independent rect. 20 1
134 53.08 atmosphere 1005.0 30 > th dose dependent rect. 20 1
135 53.09 temperature 20.0 30 > th dose independent rect. 20 1
138 53.09 humidity 80.0 30 > th dose independent rect. 20 1
139 53.09 humidity 90.0 30 < th dose independent rect. 20 1
140 53.09 temperature 10.0 30 > th dose dependent rect. 20 1
145 53.09 atmosphere 995.0 30 > th dose dependent rect. 20 1
148 53.10 wind 5.0 30 < th dose independent rect. 20 1
151 53.10 temperature 10.0 30 > th dose independent rect. 20 1
153 53.10 temperature 30.0 30 < th dose independent rect. 20 1
154 53.10 humidity 50.0 30 > th dose independent rect. 20 1
157 53.10 atmosphere 995.0 30 > th dose independent rect. 20 1
159 53.10 atmosphere 1010.0 30 < th dose independent rect. 20 1
161 53.10 radiation 1.0 30 < th dose independent rect. 20 1
166 53.10 precipitation 0.1 30 < th dose independent rect. 20 1
168 53.10 temperature 10.0 30 > th dose independent rect. 21 23
169 53.10 atmosphere 995.0 30 > th dose independent rect. 21 23
170 53.10 wind 1.0 30 > th dose dependent rect. 20 1
171 53.10 wind 7.0 30 < th dose dependent rect. 20 1
173 53.10 humidity 50.0 30 > th dose dependent rect. 20 1
175 53.10 humidity 90.0 30 < th dose dependent rect. 20 1
176 53.10 radiation 1.0 30 < th dose dependent rect. 20 1
181 53.10 precipitation 0.1 30 < th dose dependent rect. 20 1
185 53.12 precipitation 0.1 30 < th dose independent rect. 21 23
188 53.12 atmosphere 1015.0 30 < th dose dependent rect. 20 1
190 53.12 precipitation 0.1 30 < th dose dependent rect. 21 23
194 53.13 wind 5.0 10 > th dose dependent rect. 12 1
196 53.13 temperature 30.0 30 < th dose dependent rect. 20 1
197 53.13 humidity 50.0 4320 > th dose dependent rect. 4 1
198 53.13 atmosphere 1015.0 30 < th dose dependent rect. 2 1
215 53.17 temperature 30.0 30 < th dose dependent rect. 2 1
243 53.19 wind 9.0 30 < th dose independent rect. 21 23
262 53.25 wind 9.0 4320 > th dose dependent rect. 15 1
266 53.27 wind 5.0 10 > th dose independent rect. 12 1
282 53.32 wind 9.0 4320 > th dose independent rect. 15 1
285 53.32 wind 9.0 4320 > th dose dependent rect. 21 19
288 53.33 wind 9.0 4320 > th dose dependent rect. 3 13
294 53.34 wind 3.0 4320 < th dose independent rect. 3 1
301 53.36 wind 9.0 4320 > th dose independent rect. 13 1
318 53.38 wind 1.0 30 > th dose independent rect. 2 1
329 53.40 humidity 80.0 4320 < th dose dependent rect. 22 9
330 53.40 wind 9.0 4320 > th dose dependent rect. 18 22
354 53.46 wind 9.0 4320 > th dose independent rect. 13 3
357 53.47 wind 9.0 4320 < th dose independent rect. 15 1
360 53.47 wind 1.0 10 > th dose dependent rect. 11 2
366 53.49 wind 3.0 4320 > th dose independent rect. 3 2
367 53.49 humidity 80.0 4320 > th dose independent rect. 22 8
368 53.49 wind 9.0 30 < th dose independent rect. 3 23
409 53.54 humidity 80.0 4320 < th dose independent rect. 22 9
430 53.58 humidity 80.0 4320 < th dose dependent rect. 22 1
453 53.62 radiation 40.0 10 < th dose independent rect. 21 23
464 53.64 wind 9.0 4320 < th dose independent rect. 13 3
475 53.65 humidity 50.0 30 > th dose independent rect. 21 23
491 53.68 precipitation 0.1 1440 < th dose independent rect. 21 1
493 53.68 precipitation 0.1 1440 < th dose dependent rect. 21 1
503 53.69 wind 9.0 4320 > th dose independent rect. 21 19
509 53.70 wind 9.0 4320 > th dose independent rect. 23 17
511 53.70 wind 9.0 4320 > th dose independent rect. 18 22
512 53.70 wind 1.0 4320 > th dose dependent rect. 3 1
521 53.71 wind 9.0 4320 > th dose independent rect. 3 13
539 53.73 radiation 1.0 90 > th dose dependent rect. 11 1
560 53.76 temperature 20.0 90 > th dose dependent rect. 11 1
563 53.76 temperature 25.0 720 > th dose dependent rect. 21 12
573 53.77 wind 9.0 4320 > th dose dependent sin 2 NA
578 53.78 radiation 20.0 90 > th dose independent rect. 11 1
585 53.78 wind 1.0 30 > th dose independent rect. 13 22
625 53.84 wind 7.0 4320 < th dose dependent rect. 3 1
629 53.85 wind 3.0 10 > th dose independent rect. 6 1
631 53.85 humidity 80.0 4320 < th dose independent rect. 22 2
645 53.86 temperature 25.0 30 > th dose dependent rect. 20 5
649 53.87 radiation 1.0 10 > th dose dependent rect. 11 1
653 53.88 humidity 80.0 90 < th dose independent rect. 11 1
658 53.88 wind 9.0 4320 < th dose independent rect. 1 15
672 53.89 wind 9.0 4320 < th dose independent rect. 3 13
674 53.89 wind 9.0 4320 < th dose independent rect. 22 18
727 53.94 wind 9.0 4320 < th dose independent rect. 18 22
744 53.96 radiation 40.0 10 > th dose independent rect. 11 1
762 53.97 temperature 25.0 720 < th dose independent rect. 1 8
764 53.97 temperature 30.0 30 < th dose independent rect. 21 23
781 53.98 radiation 40.0 10 < th dose dependent rect. 21 23
801 53.99 temperature 25.0 720 > th dose independent rect. 1 8
836 54.00 wind 9.0 4320 > th dose independent rect. 12 22
845 54.01 wind 9.0 1440 < th dose independent rect. 21 1
851 54.01 temperature 25.0 720 > th dose independent rect. 3 5
864 54.01 wind 9.0 4320 > th dose independent rect. 12 20
885 54.02 temperature 30.0 30 < th dose independent rect. 11 2
942 54.05 atmosphere 1015.0 30 < th dose independent rect. 21 23
952 54.06 temperature 25.0 30 > th dose independent rect. 11 2
969 54.06 temperature 25.0 720 > th dose dependent rect. 1 7
972 54.07 wind 9.0 4320 > th dose independent sin 2 NA
987 54.07 temperature 10.0 30 > th dose dependent rect. 13 22
989 54.08 temperature 25.0 270 > th dose independent rect. 8 1