Os11g0598500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NB-ARC domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0598500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : NB-ARC domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.52 | 0.501 | 9.2 | 2.96 | 0.601 | -0.3 | 0.045 | 3.19 | 0.933 | 5.35 | 50 | 4009 | -- | -- |
| 115.08 | 0.5 | 9.27 | 2.65 | 0.591 | 0.854 | 0.0812 | -- | 0.947 | 5.21 | 42.03 | 6325 | -- | -- |
| 113.53 | 0.496 | 9.2 | 2.96 | 0.601 | -0.3 | -- | 3.2 | 0.933 | 5.34 | 50 | 4008 | -- | -- |
| 112.87 | 0.495 | 9.27 | 2.66 | 0.606 | 0.792 | -- | -- | 0.966 | 5.24 | 41.17 | 10059 | -- | -- |
| 132.2 | 0.536 | 9.21 | 2.95 | -- | -0.238 | -- | 3.07 | 0.951 | -- | 49.99 | 4076 | -- | -- |
| 129.31 | 0.533 | 9.28 | 2.98 | 0.593 | -- | 0.0829 | -- | 0.915 | 5.24 | -- | -- | -- | -- |
| 129.33 | 0.533 | 9.28 | 2.98 | 0.594 | -- | -- | -- | 0.915 | 5.24 | -- | -- | -- | -- |
| 132.12 | 0.535 | 9.28 | 2.72 | -- | 0.807 | -- | -- | 0.972 | -- | 41.3 | 10047 | -- | -- |
| 268.64 | 0.763 | 9.34 | -- | 0.643 | 1.9 | -- | -- | 0.713 | 5.31 | 39 | 9971 | -- | -- |
| 147.75 | 0.568 | 9.29 | 3 | -- | -- | -- | -- | 0.93 | -- | -- | -- | -- | -- |
| 363.74 | 0.892 | 9.36 | -- | 0.646 | -- | -- | -- | 0.583 | 5.07 | -- | -- | -- | -- |
| 290.75 | 0.794 | 9.34 | -- | -- | 1.9 | -- | -- | 0.713 | -- | 39 | 9971 | -- | -- |
| 385.62 | 0.917 | 9.37 | -- | -- | -- | -- | -- | 0.596 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.06 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 3 | 105.09 | humidity | 70 | 43200 | < th | dose independent | rect. | 23 | 14 |
| 12 | 105.24 | humidity | 70 | 43200 | < th | dose independent | sin | 6 | NA |
| 16 | 105.32 | humidity | 70 | 43200 | > th | dose independent | rect. | 22 | 15 |
| 24 | 105.44 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 36 | 105.52 | humidity | 60 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 40 | 105.57 | humidity | 70 | 43200 | > th | dose independent | sin | 6 | NA |
| 70 | 105.82 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 81 | 105.88 | radiation | 20 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 104 | 106.04 | humidity | 80 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 105 | 106.05 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 131 | 106.16 | humidity | 80 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 132 | 106.18 | humidity | 80 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 146 | 106.25 | radiation | 10 | 43200 | < th | dose independent | rect. | 11 | 20 |
| 151 | 106.29 | humidity | 70 | 43200 | < th | dose independent | no | NA | NA |
| 161 | 106.32 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 168 | 106.34 | humidity | 70 | 43200 | < th | dose independent | rect. | 5 | 23 |
| 175 | 106.35 | humidity | 70 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 179 | 106.37 | humidity | 60 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 196 | 106.39 | humidity | 80 | 43200 | < th | dose dependent | rect. | 17 | 21 |
| 197 | 106.40 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 246 | 106.50 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 20 |
| 248 | 106.51 | humidity | 70 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 252 | 106.51 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 17 |
| 280 | 106.56 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 7 |
| 304 | 106.58 | radiation | 10 | 43200 | < th | dose independent | sin | 15 | NA |
| 378 | 106.67 | humidity | 80 | 43200 | < th | dose dependent | rect. | 17 | 13 |
| 380 | 106.67 | humidity | 80 | 43200 | < th | dose dependent | rect. | 9 | 22 |
| 402 | 106.71 | humidity | 80 | 43200 | < th | dose dependent | sin | 12 | NA |
| 405 | 106.72 | humidity | 70 | 43200 | > th | dose independent | no | NA | NA |
| 417 | 106.72 | humidity | 80 | 43200 | < th | dose dependent | sin | 4 | NA |
| 446 | 106.75 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 472 | 106.77 | humidity | 70 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 478 | 106.78 | humidity | 80 | 43200 | < th | dose dependent | no | NA | NA |
| 501 | 106.81 | radiation | 30 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 506 | 106.81 | humidity | 70 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 516 | 106.82 | radiation | 30 | 43200 | < th | dose independent | rect. | 24 | 11 |
| 517 | 106.82 | radiation | 30 | 43200 | < th | dose independent | rect. | 22 | 13 |
| 547 | 106.83 | humidity | 80 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 553 | 106.84 | radiation | 30 | 43200 | < th | dose independent | rect. | 15 | 20 |
| 560 | 106.84 | humidity | 80 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 562 | 106.84 | humidity | 80 | 43200 | < th | dose dependent | rect. | 12 | 23 |
| 567 | 106.85 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 584 | 106.86 | radiation | 10 | 43200 | < th | dose independent | no | NA | NA |
| 678 | 106.89 | radiation | 30 | 43200 | < th | dose independent | sin | 9 | NA |
| 765 | 106.97 | radiation | 30 | 43200 | < th | dose independent | rect. | 7 | 7 |
| 784 | 106.97 | radiation | 30 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 931 | 107.05 | humidity | 50 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 955 | 107.09 | humidity | 70 | 43200 | < th | dose independent | sin | 15 | NA |
| 984 | 107.11 | radiation | 10 | 14400 | > th | dose dependent | rect. | 6 | 1 |