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Os11g0598300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NB-ARC domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.41 (0.0292) R2 : 0.758
β1 : 2.75 (0.107) R2dD : 0.365 R2D : 0.2
β2 : 1.53 (0.0714) R2dC : 0.244 R2C : 0.201
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.29 (0.0623) R2dN8 : 0.304 R2N8 : 0.135
σ : 0.549
deviance : 137.24
__
_____
C
peak time of C : 2.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
114.05 0.502 7.27 2.52 1.54 0.562 -0.461 3.12 1.45 2.4 10 23271 -- --
127.89 0.527 7.39 2.61 1.51 0.485 -0.28 -- 1.38 2.46 22.12 26886 -- --
111.61 0.492 7.27 2.6 1.55 0.606 -- 3.08 1.45 2.37 9.997 32633 -- --
128.01 0.527 7.39 2.68 1.54 0.493 -- -- 1.41 2.34 22.05 28298 -- --
190.6 0.647 7.42 2.72 -- 0.912 -- -0.00269 1.25 -- 9.997 32633 -- --
136.64 0.548 7.41 2.74 1.53 -- -0.407 -- 1.28 2.4 -- -- -- --
137.24 0.549 7.41 2.75 1.53 -- -- -- 1.29 2.4 -- -- -- --
190.6 0.646 7.42 2.72 -- 0.912 -- -- 1.25 -- 9.997 32633 -- --
259.38 0.75 7.41 -- 1.5 1.45 -- -- 1.24 2.16 39 30075 -- --
275.48 0.776 7.4 2.81 -- -- -- -- 1.32 -- -- -- -- --
336.49 0.858 7.48 -- 1.58 -- -- -- 0.981 2.43 -- -- -- --
334.16 0.851 7.59 -- -- 1.48 -- -- 0.696 -- 67.21 39108 -- --
484.4 1.03 7.47 -- -- -- -- -- 1.01 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.78 wind 1 43200 < th dose dependent rect. 10 1
2 104.42 temperature 15 270 > th dose dependent rect. 6 8
6 105.87 wind 1 43200 > th dose independent rect. 10 2
12 106.56 wind 1 43200 < th dose independent rect. 10 2
13 106.57 wind 9 14400 > th dose dependent rect. 19 19
16 106.77 humidity 50 14400 > th dose dependent rect. 1 6
21 106.89 temperature 10 270 > th dose dependent rect. 17 22
22 106.95 wind 9 14400 > th dose independent rect. 19 19
23 106.96 humidity 70 14400 > th dose dependent rect. 3 4
25 107.07 humidity 50 14400 > th dose dependent rect. 3 4
34 107.18 wind 9 14400 > th dose independent rect. 15 23
38 107.31 wind 9 14400 < th dose independent rect. 18 23
40 107.32 wind 9 14400 < th dose independent rect. 15 23
48 107.52 humidity 50 14400 > th dose dependent rect. 5 1
50 107.55 temperature 15 270 > th dose dependent rect. 18 20
52 107.57 wind 9 14400 < th dose independent rect. 19 19
62 107.68 wind 9 14400 > th dose independent rect. 18 23
65 107.73 temperature 15 270 > th dose dependent rect. 19 18
68 107.79 wind 9 14400 < th dose independent rect. 3 21
69 107.81 wind 9 14400 < th dose independent rect. 3 17
71 107.82 temperature 30 270 < th dose dependent rect. 2 15
84 107.88 wind 9 14400 < th dose independent rect. 22 22
85 107.89 wind 9 14400 > th dose independent rect. 3 22
87 107.89 wind 9 14400 > th dose dependent rect. 18 23
88 107.90 wind 9 14400 > th dose independent no NA NA
91 107.90 wind 9 14400 > th dose independent rect. 9 23
96 107.91 wind 9 14400 < th dose independent no NA NA
99 107.91 wind 9 14400 > th dose independent rect. 13 23
101 107.93 wind 9 14400 > th dose independent rect. 22 23
108 107.94 wind 9 14400 > th dose independent rect. 7 23
117 107.97 wind 9 14400 > th dose independent rect. 24 23
118 107.97 wind 9 14400 < th dose independent rect. 9 23
130 108.00 wind 9 14400 < th dose independent rect. 13 23
142 108.03 wind 9 14400 > th dose dependent rect. 15 23
194 108.23 wind 7 14400 > th dose dependent rect. 2 18
195 108.23 wind 7 14400 > th dose dependent rect. 22 20
296 108.56 wind 9 14400 > th dose independent rect. 9 16
313 108.59 wind 9 14400 > th dose dependent no NA NA
315 108.59 wind 9 14400 > th dose dependent rect. 3 22
318 108.59 wind 9 14400 > th dose dependent rect. 9 23
321 108.60 wind 7 14400 > th dose dependent sin 2 NA
331 108.63 humidity 80 43200 < th dose dependent rect. 17 14
371 108.74 wind 9 14400 < th dose independent sin 21 NA
381 108.74 wind 9 14400 > th dose dependent rect. 12 23
391 108.76 humidity 80 43200 < th dose dependent sin 12 NA
419 108.82 wind 9 14400 < th dose independent rect. 13 7
456 108.92 wind 3 43200 > th dose independent rect. 23 1
481 109.01 humidity 60 43200 > th dose independent rect. 21 17
496 109.04 humidity 60 43200 > th dose independent rect. 2 12
533 109.12 wind 9 14400 > th dose independent sin 20 NA
549 109.15 humidity 80 43200 < th dose dependent rect. 17 18
553 109.17 wind 7 14400 > th dose dependent rect. 9 11
563 109.19 wind 9 14400 > th dose dependent rect. 9 16
614 109.31 wind 3 43200 < th dose independent rect. 23 1
640 109.37 humidity 70 43200 < th dose independent rect. 19 18
650 109.41 radiation 10 43200 < th dose independent rect. 16 14
665 109.46 humidity 70 43200 < th dose independent sin 7 NA
691 109.52 radiation 10 43200 < th dose independent rect. 15 16
707 109.55 humidity 70 43200 < th dose independent rect. 16 19
710 109.56 humidity 70 43200 < th dose independent rect. 19 1
773 109.66 temperature 30 90 < th dose dependent rect. 4 15
776 109.67 wind 9 14400 < th dose independent sin 6 NA
822 109.76 humidity 70 43200 < th dose independent sin 11 NA
825 109.76 wind 9 14400 > th dose independent rect. 13 7
844 109.81 humidity 80 43200 < th dose dependent rect. 10 1
867 109.86 humidity 70 43200 < th dose independent rect. 23 13
877 109.88 radiation 10 43200 < th dose independent rect. 16 4
880 109.88 humidity 70 43200 < th dose independent rect. 3 8
902 109.90 humidity 70 43200 > th dose independent rect. 18 17
905 109.91 humidity 70 43200 > th dose independent sin 11 NA
909 109.91 humidity 90 14400 < th dose dependent rect. 5 2
931 109.97 radiation 10 43200 > th dose independent rect. 17 1
955 109.99 humidity 50 43200 < th dose independent rect. 16 1
990 110.05 humidity 70 43200 < th dose dependent rect. 10 21
999 110.07 humidity 60 43200 > th dose independent rect. 10 3