BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0598300 Os11g0598300|Os11g0598300
(1422 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G46730.1 | chr3:17213069-17215612 REVERSE LENGTH=848 74 7e-13
AT3G07040.1 | chr3:2226244-2229024 REVERSE LENGTH=927 66 1e-10
AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853 63 1e-09
AT5G35450.1 | chr5:13667809-13670685 FORWARD LENGTH=902 59 1e-08
AT1G53350.1 | chr1:19903899-19907515 FORWARD LENGTH=928 54 9e-07
>AT3G46730.1 | chr3:17213069-17215612 REVERSE LENGTH=848
Length = 847
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 127/282 (45%), Gaps = 27/282 (9%)
Query: 758 DNDNAQIFRGILEECEGHEFCMKIFTHAVYANPKRSNEELRKLHSTLQSPKKSFDTIAKK 817
D D + + ++++C G + + + + + KR+NE ++ ++L K
Sbjct: 348 DEDLQRTGKEMVKKCGGLPLAIVVLSGLL--SRKRTNE-WHEVCASLWRRLKDNSIHIST 404
Query: 818 MFMYSYNDLPKEYKSCLLYLAIFPKGQKIRRSTLIARWVAEGLTFKEDWPSSVYQANRCF 877
+F S+ ++ E K C LY ++FP+ +I+ LI VAEG +ED + RC+
Sbjct: 405 VFDLSFKEMRHELKLCFLYFSVFPEDYEIKVEKLIHLLVAEGF-IQEDEEMMMEDVARCY 463
Query: 878 -DALIRRWLVYPDDISATGKIKSCVVGDPVH----------GFITAIARKQH---IVETR 923
D L+ R LV + I GK+ SC + D + F+ KQH I
Sbjct: 464 IDELVDRSLVKAERIE-RGKVMSCRIHDLLRDLAIKKAKELNFVNVYNEKQHSSDICRRE 522
Query: 924 LSHHLARHFSIFN---DLRLRSSDRIGT---FFQGXXXXXXXXXXXXXDLEGCQCFASKN 977
+ HHL + + + + R+RS IG F ++EG F SKN
Sbjct: 523 VVHHLMNDYYLCDRRVNKRMRSFLFIGERRGFGYVNTTNLKLKLLRVLNMEGL-LFVSKN 581
Query: 978 -QRYLKDICNKMLLLKYLSLKGTDITQLPKEINCLRELEVLD 1018
L D+ +++ L+YL + T ++ LP I+ LR L+ LD
Sbjct: 582 ISNTLPDVIGELIHLRYLGIADTYVSILPASISNLRFLQTLD 623
>AT3G07040.1 | chr3:2226244-2229024 REVERSE LENGTH=927
Length = 926
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 114/549 (20%), Positives = 234/549 (42%), Gaps = 66/549 (12%)
Query: 764 IFRGILEECEGHEFCMKIFTHAVYANPKRSNEELRKLHSTLQ---SPKKSFDTIAKKMFM 820
I R ++E C+G + I + + K+ E +K++STL + + MF+
Sbjct: 365 IARKLVERCQG--LPLAIASLGSMMSTKKFESEWKKVYSTLNWELNNNHELKIVRSIMFL 422
Query: 821 YSYNDLPKEYKSCLLYLAIFPKGQKIRRSTLIARWVAEGLTFKEDWPSSVYQANRCFDAL 880
S+NDLP K C LY ++FP +++R LI W+A+ F E P +A D+
Sbjct: 423 -SFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQ--RFVE--PIRGVKAEEVADSY 477
Query: 881 IRRWLVYPDDISAT-----GKIKSCVVGDPVHGFITAIARKQHIVET------------R 923
+ LVY + + G+ K+ + D + ++++ + +
Sbjct: 478 LNE-LVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSKLERFCDVYNDDSDGDDAAET 536
Query: 924 LSHHLARHFSIFNDL---RLRSSDRIGTFFQGXXXXXXXXXXXXXDLEGCQCFASKNQRY 980
+ ++ +RH I ++ +R+++ + + +L +
Sbjct: 537 MENYGSRHLCIQKEMTPDSIRATN-LHSLLVCSSAKHKMELLPSLNLLRALDLEDSSISK 595
Query: 981 LKDICNKMLLLKYLSLKGTDITQLPKEINCLRELEVLDIRETKVPA-NATVHVXXXXXXX 1039
L D M LKYL+L T + +LPK + L LE L+ + +K+ +
Sbjct: 596 LPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKIEELPLGMWKLKKLRYL 655
Query: 1040 XXAGASQIDPTPRNFVTNVRIPSRIDKMINIEVLSNVKAQQHDNLEDIGKLCQLRKLGVV 1099
++ + N+V R+ +I ++ +++V+ A+ + ++++G + QL ++ +V
Sbjct: 656 ITFRRNEGHDSNWNYVLGTRVVPKIWQLKDLQVMDCFNAED-ELIKNLGCMTQLTRISLV 714
Query: 1100 IDGKKSHLGSLLKAISDLHASLRSLSIT-------IPTTTLEVTPSSPELQDIASRLKDH 1152
+ ++ H L +++ + +R LS+T + L T S +L +A +L+
Sbjct: 715 M-VRREHGRDLCDSLNKI-KRIRFLSLTSIDEEEPLEIDDLIATASIEKLF-LAGKLERV 771
Query: 1153 PEFLESLSISGAKHLFPLLTKGGNKKLAKVTLSNTPLNQDDLKFFAQLPMLQCVRLRHIS 1212
P + +L + L + L + L ++ + LP L + + +
Sbjct: 772 PSWFNTL-----------------QNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYN-A 813
Query: 1213 CTESVLNFKKDDFKCLKYL-LIEGSNLTNITFEDEAACELEKM-VLSSTCIESIS-GVHG 1269
L F + F+ LK L +++ +LT + ED A EL+K+ V + +E + G+
Sbjct: 814 YMGPRLRFAQ-GFQNLKILEIVQMKHLTEVVIEDGAMFELQKLYVRACRGLEYVPRGIEN 872
Query: 1270 LPKFEELEL 1278
L +EL L
Sbjct: 873 LINLQELHL 881
>AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853
Length = 852
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%)
Query: 822 SYNDLPKEYKSCLLYLAIFPKGQKIRRSTLIARWVAEGLTFKEDWPSSVYQANRCFDALI 881
SY++LP KSC+L L+++P+ I + L+ W+ EG + S+ CF L
Sbjct: 407 SYDELPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWRNGRSATESGEDCFSGLT 466
Query: 882 RRWLVYPDDISATGKIKSCVVGDPVHGFITAIARK 916
R L+ D + +G I +C + D V + IA+K
Sbjct: 467 NRCLIEVVDKTYSGTIITCKIHDMVRDLVIDIAKK 501
>AT5G35450.1 | chr5:13667809-13670685 FORWARD LENGTH=902
Length = 901
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 125/306 (40%), Gaps = 40/306 (13%)
Query: 817 KMFMYSYNDLPKEYKSCLLYLAIFPKGQKIRRSTLIARWVAEGLTFKEDWPSSVYQANRC 876
++ SY DLP + K C LYLA FP+ KI+ TL + W AEG+ D + +
Sbjct: 404 RILSLSYEDLPTDLKHCFLYLAHFPEDYKIKTRTLYSYWAAEGIY---DGLTILDSGEDY 460
Query: 877 FDALIRRWLVYPDDISATGKIKSCVVGDPVHGFITAIARKQHIVET-------------- 922
+ L+RR LV + + + ++K C + D + + A+ ++ ++
Sbjct: 461 LEELVRRNLVIAEKSNLSWRLKLCQMHDMMREVCISKAKVENFLQIIKVPTSTSTIIAQS 520
Query: 923 -----RLSHHLARHFSIF-NDLRLRSSDRIG----TFFQGXXXXXXXXXXXXXDLEGCQC 972
RL+ H + F I + ++RS +G + Q DL +
Sbjct: 521 PSRSRRLTVHSGKAFHILGHKKKVRSLLVLGLKEDLWIQSASRFQSLPLLRVLDLSSVKF 580
Query: 973 FASKNQRYLKDICNKMLLLKYLSLKGTDITQLPKEINCLRELEVLDIRETKVPANATVHV 1032
K L ++ L++LSL ++ LP I L+ + L++ V VHV
Sbjct: 581 EGGK----LPSSIGGLIHLRFLSLHQAVVSHLPSTIRNLKLMLYLNLH---VAIGVPVHV 633
Query: 1033 XXXXXXXXXAGASQIDPTPRNFVTNVRIPSRIDKMINIEVLSNVKAQQHDNLEDIGKLCQ 1092
+ P + ++ + ++N+E L + QH ++ D+ ++ +
Sbjct: 634 PNVLKEMLELRYLSL---PLDMHDKTKL--ELGDLVNLEYLWCF-STQHSSVTDLLRMTK 687
Query: 1093 LRKLGV 1098
LR GV
Sbjct: 688 LRFFGV 693
>AT1G53350.1 | chr1:19903899-19907515 FORWARD LENGTH=928
Length = 927
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 817 KMFMYSYNDLPKEYKSCLLYLAIFPKGQKIRRSTLIARWVAEGLTFKEDWPSSVYQANRC 876
++ SY DLP + K C YLA FP+ KI L WVAEG+ S++
Sbjct: 405 RVLSLSYEDLPMQLKHCFFYLAHFPEDYKIDVKILFNYWVAEGIITPFHDGSTIQDTGES 464
Query: 877 F-DALIRRWLVYPDDISATGKIKSCVVGDPVHGFITAIARKQHIV 920
+ + L+RR +V ++ T +I+ C + D + + A++++ +
Sbjct: 465 YLEELVRRNMVVVEESYLTSRIEYCQMHDMMREVCLSKAKEENFI 509
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 25,755,517
Number of extensions: 1004597
Number of successful extensions: 3158
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3173
Number of HSP's successfully gapped: 5
Length of query: 1422
Length of database: 11,106,569
Length adjustment: 111
Effective length of query: 1311
Effective length of database: 8,063,393
Effective search space: 10571108223
Effective search space used: 10571108223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 118 (50.1 bits)