Os11g0595000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF538 family protein.
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Os11g0595000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF538 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 466.02 | 1.01 | 3.45 | 1.03 | 0.184 | 36.7 | -0.34 | 179 | -0.258 | 12 | 4.894 | 10 | 0.0159 | 7.98 |
| 506.98 | 1.06 | 3.26 | 0.174 | 0.142 | -0.154 | -0.67 | -- | -0.263 | 13 | 4.894 | 10 | 0.0159 | 7.98 |
| 466.45 | 1.01 | 3.45 | 1.02 | 0.187 | 36.7 | -- | 180 | -0.26 | 11.3 | 4.9 | 10 | 0.00989 | 7.97 |
| 507.73 | 1.05 | 3.26 | 0.146 | 0.145 | -0.664 | -- | -- | -0.272 | 11.7 | 4.913 | 6 | 0.252 | 7.72 |
| 468.65 | 1.01 | 3.45 | 1.01 | -- | 36.7 | -- | 180 | -0.261 | -- | 4.9 | 10 | 0.0128 | 7.98 |
| 507.02 | 1.06 | 3.26 | 0.176 | 0.143 | -- | -0.68 | -- | -0.262 | 13.1 | -- | -- | -- | -- |
| 508.55 | 1.06 | 3.26 | 0.15 | 0.165 | -- | -- | -- | -0.267 | 11 | -- | -- | -- | -- |
| 509.21 | 1.05 | 3.27 | 0.132 | -- | -0.652 | -- | -- | -0.274 | -- | 4.861 | 6 | 0.224 | 7.76 |
| 508.09 | 1.05 | 3.27 | -- | 0.148 | -0.674 | -- | -- | -0.282 | 10.8 | 4.846 | 6 | 0.27 | 7.72 |
| 510.24 | 1.06 | 3.27 | 0.146 | -- | -- | -- | -- | -0.268 | -- | -- | -- | -- | -- |
| 509.14 | 1.06 | 3.27 | -- | 0.164 | -- | -- | -- | -0.284 | 10.9 | -- | -- | -- | -- |
| 509.6 | 1.05 | 3.27 | -- | -- | -0.718 | -- | -- | -0.29 | -- | 4.742 | 6 | 0.27 | 7.71 |
| 510.8 | 1.05 | 3.27 | -- | -- | -- | -- | -- | -0.284 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 475.17 | wind | 5.0 | 10 | > th | dose independent | rect. | 24 | 8 |
| 2 | 477.23 | wind | 5.0 | 10 | > th | dose dependent | rect. | 24 | 8 |
| 18 | 480.19 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 9 | 5 |
| 19 | 480.25 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 8 | 23 |
| 21 | 480.43 | wind | 3.0 | 10 | > th | dose dependent | rect. | 24 | 1 |
| 25 | 481.20 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 20 | 18 |
| 38 | 482.18 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 5 | 10 |
| 47 | 482.48 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 4 | 12 |
| 63 | 482.98 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 22 | 1 |
| 64 | 482.98 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 65 | 483.09 | wind | 5.0 | 90 | > th | dose independent | rect. | 23 | 1 |
| 70 | 483.23 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 14 | 1 |
| 85 | 483.50 | atmosphere | 1005.0 | 90 | < th | dose independent | sin | 3 | NA |
| 98 | 483.58 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 24 | 14 |
| 99 | 483.62 | wind | 5.0 | 30 | > th | dose independent | rect. | 24 | 6 |
| 107 | 483.72 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 119 | 483.76 | wind | 5.0 | 30 | > th | dose dependent | rect. | 24 | 6 |
| 129 | 483.89 | wind | 5.0 | 10 | > th | dose independent | rect. | 24 | 4 |
| 133 | 483.89 | wind | 5.0 | 10 | > th | dose dependent | rect. | 24 | 4 |
| 143 | 484.02 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 23 | 1 |
| 146 | 484.02 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 23 | 1 |
| 149 | 484.06 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 23 | 17 |
| 153 | 484.12 | wind | 5.0 | 10 | > th | dose independent | rect. | 24 | 2 |
| 171 | 484.26 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 177 | 484.32 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 193 | 484.45 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 8 | 7 |
| 196 | 484.49 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 198 | 484.51 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 206 | 484.68 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 7 | 9 |
| 223 | 484.79 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 8 | 13 |
| 238 | 484.89 | atmosphere | 1000.0 | 270 | > th | dose dependent | sin | 0 | NA |
| 240 | 484.97 | atmosphere | 1015.0 | 270 | < th | dose dependent | sin | 0 | NA |
| 248 | 485.07 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 17 | 22 |
| 282 | 485.29 | atmosphere | 1000.0 | 720 | > th | dose dependent | rect. | 8 | 4 |
| 292 | 485.34 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 293 | 485.35 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 323 | 485.46 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 14 | 6 |
| 328 | 485.50 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 4 | 9 |
| 339 | 485.57 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 372 | 485.82 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 8 | 22 |
| 379 | 485.87 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 19 | 21 |
| 384 | 485.90 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 416 | 486.05 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 423 | 486.08 | radiation | 10.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 463 | 486.28 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 7 | 13 |
| 472 | 486.33 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 23 | 13 |
| 474 | 486.34 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 10 | 10 |
| 546 | 486.64 | atmosphere | 1005.0 | 90 | > th | dose independent | sin | 2 | NA |
| 553 | 486.65 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 606 | 486.76 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 607 | 486.77 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 2 | 12 |
| 671 | 486.92 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 23 | 14 |
| 680 | 486.95 | radiation | 10.0 | 30 | > th | dose dependent | rect. | 15 | 17 |
| 699 | 486.99 | radiation | 20.0 | 30 | > th | dose independent | rect. | 15 | 17 |
| 729 | 487.10 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 24 | 15 |
| 759 | 487.18 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 4 | 10 |
| 789 | 487.27 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 819 | 487.37 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 831 | 487.40 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 880 | 487.54 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 19 | 23 |
| 881 | 487.54 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 945 | 487.70 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 7 | 11 |
| 972 | 487.77 | atmosphere | 1000.0 | 270 | > th | dose dependent | no | NA | NA |
| 979 | 487.79 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 5 | 7 |
| 991 | 487.83 | radiation | 10.0 | 90 | > th | dose dependent | rect. | 7 | 1 |