BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0595000 Os11g0595000|Os11g0595000
(126 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G56580.1 | chr1:21198402-21198902 REVERSE LENGTH=167 116 3e-27
AT1G09310.1 | chr1:3009109-3009648 FORWARD LENGTH=180 112 5e-26
AT5G46230.1 | chr5:18742593-18743024 REVERSE LENGTH=144 110 2e-25
AT4G24130.1 | chr4:12527861-12528423 FORWARD LENGTH=158 97 2e-21
AT1G30020.1 | chr1:10515874-10516347 REVERSE LENGTH=158 96 5e-21
AT5G49600.1 | chr5:20130780-20131295 FORWARD LENGTH=172 76 4e-15
AT5G37070.1 | chr5:14651091-14652147 FORWARD LENGTH=171 51 2e-07
AT2G03350.1 | chr2:1019733-1021071 REVERSE LENGTH=180 47 2e-06
AT3G08890.1 | chr3:2706701-2707775 FORWARD LENGTH=171 47 3e-06
AT5G01610.1 | chr5:231075-231994 FORWARD LENGTH=171 45 7e-06
>AT1G56580.1 | chr1:21198402-21198902 REVERSE LENGTH=167
Length = 166
Score = 116 bits (290), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 5 LARRRSIELLQELNLPKGLFPLDDIEEFGYNRANGFMWILHRKKKEHTFKKIKQTVSYAT 64
+ R ++ E L+E+++P GL PL DIEE GY+R G +W+ +K H F+ I + VSYAT
Sbjct: 20 ICREKTKEFLKEVSMPNGLLPLKDIEEVGYDRETGIVWLKQKKSITHKFEAIGKLVSYAT 79
Query: 65 EVTAFVEKGKLKKITGVKTKELMLWLX-XXXXXXXXXXAGKITFKTGTGLSDSFDASAF 122
EV A VE GK+KK+TGVK KEL++W+ +GKI F+T TGLS +F SAF
Sbjct: 80 EVIAQVEVGKIKKLTGVKAKELLIWVTLNELVLEQPTSSGKINFRTPTGLSRTFPVSAF 138
>AT1G09310.1 | chr1:3009109-3009648 FORWARD LENGTH=180
Length = 179
Score = 112 bits (280), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Query: 5 LARRRSIELLQELNLPKGLFPLDDIEEFGYNRANGFMWILHRKKKEHTFKKIKQTVSYAT 64
+ R ++ L+E+++P GL PL DIEE GY+R +G +W+ +K H F +I + VSY T
Sbjct: 20 ICREKTKCFLKEISMPNGLLPLKDIEEVGYDRESGVVWLKQKKSITHKFTEIDKLVSYGT 79
Query: 65 EVTAFVEKGKLKKITGVKTKELMLWLXXXXXXXXXXXAGKITFKTGTGLSDSFDASAF 122
EVTA VE GK+KK+TGVK KEL++W+ KITFKT T LS +F +AF
Sbjct: 80 EVTAIVETGKIKKLTGVKAKELLIWVTINEIYTEEPPT-KITFKTPTTLSRTFPVTAF 136
>AT5G46230.1 | chr5:18742593-18743024 REVERSE LENGTH=144
Length = 143
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 79/120 (65%)
Query: 6 ARRRSIELLQELNLPKGLFPLDDIEEFGYNRANGFMWILHRKKKEHTFKKIKQTVSYATE 65
++++ E+L +NLPKGL PLD++ E G+N++ G++WI + K +H FK I + VSY +E
Sbjct: 23 CKQKAKEILSTMNLPKGLLPLDNMTEIGHNKSTGYVWIKIKNKVQHRFKAIGRNVSYDSE 82
Query: 66 VTAFVEKGKLKKITGVKTKELMLWLXXXXXXXXXXXAGKITFKTGTGLSDSFDASAFELD 125
VTA +E ++ ++TG+K+KE+++W+ +ITF TGLS +F +AFE D
Sbjct: 83 VTAILENRRMSQLTGIKSKEILIWVTISEIFVNHQDPTQITFANPTGLSRTFPVTAFEED 142
>AT4G24130.1 | chr4:12527861-12528423 FORWARD LENGTH=158
Length = 157
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 69/117 (58%)
Query: 6 ARRRSIELLQELNLPKGLFPLDDIEEFGYNRANGFMWILHRKKKEHTFKKIKQTVSYATE 65
++S+ELL+EL PKG+ PL ++ E G RA G++W+ EH F+ VSY E
Sbjct: 25 CYKQSLELLEELGFPKGVMPLKNLVECGRVRATGYVWMKQDTPYEHFFEATNTRVSYGLE 84
Query: 66 VTAFVEKGKLKKITGVKTKELMLWLXXXXXXXXXXXAGKITFKTGTGLSDSFDASAF 122
VTA+V+K +KK+TGVK+K++ LW+ + KI FKT G+ SF + F
Sbjct: 85 VTAYVDKCCMKKMTGVKSKQMFLWVPIVEMSMEEPKSKKIYFKTPMGIGRSFPVTGF 141
>AT1G30020.1 | chr1:10515874-10516347 REVERSE LENGTH=158
Length = 157
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 59/79 (74%)
Query: 12 ELLQELNLPKGLFPLDDIEEFGYNRANGFMWILHRKKKEHTFKKIKQTVSYATEVTAFVE 71
ELL + LP GL PL D+ E GYN+ GF+W+ R K EHTF++I + V Y TE+TAFVE
Sbjct: 29 ELLALIKLPTGLLPLKDMTEVGYNKTKGFVWMRMRSKIEHTFREIGRRVLYDTEITAFVE 88
Query: 72 KGKLKKITGVKTKELMLWL 90
+++++TGVK+KELM+W+
Sbjct: 89 DRRMRRLTGVKSKELMIWV 107
>AT5G49600.1 | chr5:20130780-20131295 FORWARD LENGTH=172
Length = 171
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 6 ARRRSIELLQELNLPKGLFPLDDIEEFGYNRANGFMWILHRKKKEHTFKKIKQ------- 58
R + LL E+ LP L +I+E GY + GF+W+ H++KK+ K+ Q
Sbjct: 19 CREKFGSLLSEIGLPNRLLSNKEIKECGYVKDTGFVWLKHKEKKKEDQKRRYQDLLRFDN 78
Query: 59 -TVSYATEVTAFVEKGKLKKITGVKTKELMLWLXXXXXXXXXXXAGKITFKTGTG-LSDS 116
V + EVTA+ E ++KK+TGVK KE M+W+ +G ITFKT G LS S
Sbjct: 79 VVVCFEDEVTAYFEPNRIKKLTGVKAKEFMVWI-SLGEIQVNRSSGLITFKTEVGLLSKS 137
Query: 117 FDASAFE 123
S FE
Sbjct: 138 LPLSVFE 144
>AT5G37070.1 | chr5:14651091-14652147 FORWARD LENGTH=171
Length = 170
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 12 ELLQELNLPKGLFPLDDIEEFGYNRANGFMWILHRKKKEHTFKKIKQTVSYATEVTAFVE 71
ELL+E LP G+FP D + +N G + + + E ++ + ++T VT ++E
Sbjct: 56 ELLKEFGLPVGIFP-QDATNYEFNEETGKLTVFIPETCEVGYRD-SSVLRFSTTVTGYLE 113
Query: 72 KGKLKKITGVKTKELMLWLXXXXXXXXXXXAGKITFKTGTGLSDSFDA 119
KGKL ++ G+KTK +M+W+ + K+ F G S S DA
Sbjct: 114 KGKLAEVEGMKTK-VMIWV---KVTCISADSSKVYFTAGIKKSRSRDA 157
>AT2G03350.1 | chr2:1019733-1021071 REVERSE LENGTH=180
Length = 179
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 12 ELLQELNLPKGLFPLDDIEEFGYNRANGFMWILHRKKKEHTFKKIKQTVSYATEVTAFVE 71
+LL+E NLP GLFP +I + ++ + + E TFK + YAT V +
Sbjct: 61 DLLKEYNLPPGLFP-QNIICYEFDETKNKLTVFFSSPCEVTFKD-GSAIRYATRVKGILL 118
Query: 72 KGKLKKITGVKTKELMLWLXXXXXXXXXXXAGKITFKTGTGLSDSFDA 119
+GKL + G+KTK +++W+ + K+ F G S S D
Sbjct: 119 RGKLMGVEGMKTK-VLVWVKVTTISVESSKSDKLWFTAGVKKSRSKDV 165
>AT3G08890.1 | chr3:2706701-2707775 FORWARD LENGTH=171
Length = 170
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 12 ELLQELNLPKGLFPLDDIEEFGYNRANGFMWILHRKKKEHTFKKIKQTVSYATEVTAFVE 71
ELL+E LP G+FP D + +N + + E +K + + T VT F+E
Sbjct: 56 ELLKEFGLPVGIFPRD-ATNYEFNEQTRKLTVFIPSICEVGYKDT-SVLRFTTTVTGFLE 113
Query: 72 KGKLKKITGVKTKELMLWLXXXXXXXXXXXAGKITFKTGTGLSDSFDA 119
KGKL + G+KTK +M+W+ + K+ F G S S DA
Sbjct: 114 KGKLADVEGMKTK-VMIWV---KVTSISADSSKVHFTAGMKKSRSRDA 157
>AT5G01610.1 | chr5:231075-231994 FORWARD LENGTH=171
Length = 170
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 12 ELLQELNLPKGLFPLDDIEEFGYNRANGFMWILHRKKKEHTFKKIKQTVSYATEVTAFVE 71
ELL+E +LP G+FP D + ++ + +L E +K + + T VT +E
Sbjct: 56 ELLKEYDLPIGIFP-GDATNYEFDEETKKLTVLIPSICEVGYKD-SSVLKFTTTVTGHLE 113
Query: 72 KGKLKKITGVKTKELMLWLXXXXXXXXXXXAGKITFKTGTGLSDSFDA 119
KGKL + G+KTK +M+W+ A K+ F G S S DA
Sbjct: 114 KGKLTDVEGIKTK-VMIWV---KVTSISTDASKVYFTAGMKKSRSRDA 157
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,381,162
Number of extensions: 83713
Number of successful extensions: 240
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 10
Length of query: 126
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 39
Effective length of database: 8,721,377
Effective search space: 340133703
Effective search space used: 340133703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)