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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0593100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF295 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.14 (0.0344) R2 : 0.184
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.12 (0.111) R2dE : 0.225 R2E : 0.118
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.377 (0.0781) R2dN8 : 0.0658 R2N8 : -0.0406
σ : 0.63
deviance : 183.11
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C
peak time of C : --
E
wheather : temperature
threshold : 24.91
memory length : 1415
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
176.96 0.625 3.11 0.446 0.643 1.18 -0.173 -0.655 0.52 21.1 25 722 -- --
177.72 0.621 3.13 0.318 0.655 1.18 0.0182 -- 0.482 21.1 24.91 714 -- --
177.01 0.62 3.12 0.435 0.643 1.18 -- -0.582 0.515 21.1 25 730 -- --
177.54 0.621 3.14 0.263 0.621 1.15 -- -- 0.461 21.1 24.9 730 -- --
180.75 0.626 3.11 0.443 -- 1.25 -- -0.396 0.479 -- 24.9 1484 -- --
223.44 0.701 3.22 -0.0912 0.106 -- -0.00604 -- 0.0291 20.6 -- -- -- --
223.44 0.7 3.22 -0.091 0.106 -- -- -- 0.0291 20.6 -- -- -- --
180.78 0.626 3.12 0.326 -- 1.23 -- -- 0.449 -- 25 1484 -- --
179.19 0.623 3.14 -- 0.601 1.09 -- -- 0.411 21.1 25 730 -- --
224.06 0.699 3.21 -0.0914 -- -- -- -- 0.0281 -- -- -- -- --
223.66 0.7 3.21 -- 0.106 -- -- -- 0.0392 20.5 -- -- -- --
183.11 0.63 3.14 -- -- 1.12 -- -- 0.377 -- 24.91 1415 -- --
224.28 0.699 3.21 -- -- -- -- -- 0.0383 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 173.39 temperature 15 30 > th dose dependent rect. 9 23
5 174.94 temperature 30 1440 < th dose dependent rect. 11 1
7 174.97 temperature 30 1440 < th dose dependent rect. 9 5
9 175.33 temperature 25 720 < th dose independent rect. 3 22
16 175.71 temperature 25 720 < th dose independent rect. 8 17
20 175.84 temperature 20 1440 > th dose dependent rect. 11 1
21 175.84 temperature 30 1440 < th dose dependent rect. 4 10
29 176.16 temperature 25 720 > th dose independent rect. 7 19
33 176.21 temperature 25 720 < th dose independent rect. 8 22
40 176.29 temperature 25 720 > th dose independent rect. 5 21
50 176.34 temperature 25 720 > th dose independent rect. 22 23
77 176.62 temperature 25 720 < th dose independent rect. 23 23
83 176.67 temperature 30 1440 < th dose dependent sin 3 NA
115 176.96 temperature 25 720 < th dose independent no NA NA
165 177.34 temperature 25 720 > th dose independent no NA NA
170 177.38 temperature 20 1440 > th dose dependent rect. 9 5
183 177.49 temperature 25 720 < th dose independent rect. 15 23
193 177.52 temperature 10 1440 > th dose dependent rect. 2 12
207 177.61 temperature 25 720 < th dose independent rect. 18 23
210 177.61 temperature 30 720 < th dose dependent rect. 5 19
216 177.65 temperature 30 720 < th dose dependent rect. 3 21
218 177.69 temperature 25 720 > th dose independent rect. 11 23
223 177.71 temperature 25 720 > th dose independent rect. 15 23
225 177.71 temperature 15 1440 > th dose dependent rect. 4 8
293 178.05 temperature 25 720 < th dose independent sin 20 NA
324 178.18 temperature 25 720 > th dose independent rect. 18 23
325 178.18 temperature 10 1440 > th dose dependent sin 4 NA
331 178.19 temperature 30 270 < th dose dependent rect. 10 23
337 178.23 temperature 25 720 > th dose independent sin 20 NA
348 178.25 temperature 30 270 < th dose dependent rect. 8 23
363 178.32 temperature 25 720 > th dose independent rect. 20 23
365 178.32 temperature 30 720 < th dose dependent rect. 8 17
602 179.02 temperature 30 720 < th dose dependent rect. 9 20
678 179.16 temperature 30 30 < th dose dependent rect. 19 23
727 179.27 temperature 30 270 < th dose dependent rect. 18 23
769 179.37 temperature 20 720 > th dose dependent rect. 9 18
808 179.44 temperature 10 720 > th dose dependent rect. 9 18
821 179.47 temperature 30 1440 < th dose dependent no NA NA
906 179.57 temperature 30 1440 < th dose dependent rect. 15 23
940 179.63 temperature 30 1440 < th dose dependent rect. 13 23