BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0593100 Os11g0593100|AK070035
(463 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G46140.1 | chr5:18705111-18706077 REVERSE LENGTH=290 51 1e-06
AT5G46130.1 | chr5:18703058-18704390 REVERSE LENGTH=377 50 2e-06
AT1G68960.1 | chr1:25929943-25931143 FORWARD LENGTH=377 49 5e-06
>AT5G46140.1 | chr5:18705111-18706077 REVERSE LENGTH=290
Length = 289
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 109/273 (39%), Gaps = 52/273 (19%)
Query: 214 HRVILSCSPSVGRECVALLVHRPDGMISFARPG-DERWTHINRTTSNGSLKWDTGYTDAL 272
+ +S P + E + V + R D RW I T + S ++ +
Sbjct: 44 QNIAMSSCPDINNEDWVMAVKFSGSKLKLYRHNKDFRWIDIETTHESIS-----PHSSLM 98
Query: 273 YNKNDGLFYLLSFD-GSICALDLSGSSPVARNIVKKNTQWDNPSKYIVLAPWGDLLEVWR 331
Y+K D FY+ + +C+ DL+ V+ + D P KY +L E
Sbjct: 99 YSKKDQRFYVPTPGCNYLCSFDLNFKEKDKLEFVEVR-KTDLP-KY-------ELFEFME 149
Query: 332 LRDFDEPDETPECSSAE-------FEDRSDKWLTEEIML-----YKVDIDKQKLVK---- 375
+ F D E SS E + D E ++ +KV +K++L
Sbjct: 150 INSFTRTDHMVESSSGEQFLISWYYGDECKLNYKELTVIHNTKQFKVFREKEELTDRKTK 209
Query: 376 ----ISSIGDYALFLGFNSVVCLPTENFPMLKPDCAYLSDEFYEEICVKRHNWREIGIWD 431
+IGD +FLG +C+P P LKP+C Y + HN+ G++D
Sbjct: 210 FMSYTENIGDLCIFLGHGEALCIPASTIPGLKPNCIYFAG----------HNY---GVFD 256
Query: 432 L--KNCKLQSLGD-VESLHAWRNWPSPIWITPS 461
+ + C L S + + S + +WP P+ +TP+
Sbjct: 257 ITTQTCYLFSTDEGLLSSTQFPSWPHPLSLTPN 289
>AT5G46130.1 | chr5:18703058-18704390 REVERSE LENGTH=377
Length = 376
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 97/240 (40%), Gaps = 51/240 (21%)
Query: 244 RPGDERWTHINRTTSNGSLKWDTGYTDALYNKNDGLFYLLSFDGS-ICALDLSGSSPVAR 302
R D RW +I T + + Y+ Y+K + FY + G +C+ L
Sbjct: 166 RHKDLRWINIETTHGHECI---CPYSSLKYSKKEQRFYTSTPGGDWMCSFGL-------- 214
Query: 303 NIVKKNTQWDNPSKYIVLA---PWGDLLEVWRLRDFDEPDETPECSSAE----------- 348
N +K D P+ +I+ P L E+ + F D E S E
Sbjct: 215 NFKEK----DEPTYHIIDKKDLPQYMLYELEEMNSFTRTDHLVESPSGEQFLISWYYGDA 270
Query: 349 FEDRSDKWLTEEIMLYKVDIDKQK---LVKISSIGDYALFLGFNSVVCLPTENFPMLKPD 405
FE + T+ +++K + ++ + +IGD +FLG +C+P + P LKP+
Sbjct: 271 FESDTVVHKTKRFLVFKEKENAKRHKDMYYTENIGDLCIFLGHGEPMCVPASSSPGLKPN 330
Query: 406 CAYLSDEFYEEICVKRHNWREIGIWDLKNCKLQSL----GDVESLHAWRNWPSPIWITPS 461
C Y + HN+ G++D+ + G + S A+ WP P +TP+
Sbjct: 331 CIYFAG----------HNF---GVYDITTQTITLFYTEEGPLRST-AFPYWPHPFSLTPT 376
>AT1G68960.1 | chr1:25929943-25931143 FORWARD LENGTH=377
Length = 376
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 96/254 (37%), Gaps = 60/254 (23%)
Query: 240 ISFARPGDERWTHINRTTSNGSLKWDTGYTDALYNKNDGLFYLLSFDGSICALDLSG--- 296
+S RPGD WT I+ + + +Y++ D FYL + C D +G
Sbjct: 152 VSLCRPGDSEWTRIDVPCPSFH------SSTVIYSERDRRFYL-----NNCNPDYTGPTD 200
Query: 297 -------SSPVA-------RNIVKKNTQWDNPSKYIVLAPWGDLLE---------VWRLR 333
+PV+ N +++ + +N + L+E W +
Sbjct: 201 FTPKSGLHTPVSGYKRFLFSNFLEEMPELENERRLSRFRIQQQLVESASGQSFIVAWFVE 260
Query: 334 DFDEPDETPECSSAEFEDRSDKWL-TEEIMLYKVDIDKQKLVKISSIGDYALFLGFNSVV 392
+ E + + D T +IM+ + D ++ IGD +FLG N
Sbjct: 261 SLTDKGEVATWGDTRYNNNKDLCKKTHKIMVIRQDEEQGIGPYTDDIGDLCIFLGENESF 320
Query: 393 CLPTENFPMLKPDCAYLSDEFYEEICVKRHNWREIGIWDLKNCKLQSLGDVESLHAWRNW 452
CL ++FP L P+ Y + + GIWDL +C ++ L D +
Sbjct: 321 CLSAKDFPGLNPNSVYFAG-----------HGSGYGIWDLASCTIRYLSD--------ST 361
Query: 453 PSP---IWITPSLS 463
P P W+ P++S
Sbjct: 362 PPPGRMFWLPPTIS 375
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.137 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,916,219
Number of extensions: 496718
Number of successful extensions: 1170
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1177
Number of HSP's successfully gapped: 3
Length of query: 463
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 361
Effective length of database: 8,310,137
Effective search space: 2999959457
Effective search space used: 2999959457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)