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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0588500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glutathione S-transferase, C-terminal-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.0351) R2 : 0.00197
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0702 (0.0739) R2dN8 : 0.00255 R2N8 : 0.00197
σ : 0.661
deviance : 200.71
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
181.54 0.633 3.12 -0.419 0.468 0.54 0.547 -0.216 -0.0584 9.72 6.97 35 -- --
181.57 0.628 3.12 -0.416 0.469 0.545 0.763 -- -0.0565 9.87 6.927 37 -- --
181.88 0.628 3.12 -0.406 0.5 0.559 -- -0.524 -0.053 9.81 7.08 37 -- --
183.83 0.631 3.12 -0.392 0.465 0.54 -- -- -0.0583 9.65 6.78 37 -- --
188.35 0.639 3.13 -0.354 -- 0.31 -- -0.345 -0.0502 -- 7.594 38 -- --
189.76 0.646 3.14 -0.374 0.341 -- -0.558 -- -0.12 2.7 -- -- -- --
190.64 0.647 3.14 -0.361 0.351 -- -- -- -0.118 3.37 -- -- -- --
189.59 0.641 3.13 -0.335 -- 0.291 -- -- -0.0698 -- 7.59 39 -- --
187.82 0.638 3.11 -- 0.44 0.518 -- -- -0.0165 9.61 6.78 38 -- --
197.56 0.657 3.14 -0.346 -- -- -- -- -0.109 -- -- -- -- --
194.06 0.652 3.13 -- 0.343 -- -- -- -0.0776 3.37 -- -- -- --
193.17 0.647 3.12 -- -- 0.273 -- -- -0.0421 -- 7.478 38 -- --
200.71 0.661 3.13 -- -- -- -- -- -0.0702 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 172.98 wind 1.0 90 < th dose independent rect. 2 1
2 175.24 radiation 1.0 90 < th dose independent rect. 5 9
3 175.29 radiation 1.0 90 < th dose independent rect. 5 5
10 176.29 wind 1.0 90 < th dose dependent rect. 2 1
12 176.71 radiation 1.0 90 < th dose dependent rect. 5 9
13 176.74 radiation 1.0 90 < th dose dependent rect. 5 5
19 176.90 wind 1.0 270 < th dose independent rect. 24 3
23 177.74 wind 1.0 270 < th dose dependent rect. 24 3
24 177.90 radiation 10.0 10 < th dose dependent rect. 6 2
36 178.72 radiation 10.0 30 < th dose dependent sin 3 NA
38 178.79 radiation 10.0 30 < th dose dependent rect. 1 10
41 178.91 radiation 10.0 30 < th dose dependent rect. 1 15
54 179.16 humidity 50.0 30 > th dose dependent rect. 9 20
55 179.19 radiation 1.0 90 < th dose independent sin 3 NA
57 179.27 temperature 30.0 30 < th dose dependent rect. 1 5
58 179.28 radiation 10.0 30 < th dose independent rect. 1 10
89 179.53 temperature 20.0 10 < th dose independent rect. 5 1
98 179.56 radiation 10.0 30 < th dose independent rect. 1 15
104 179.57 temperature 25.0 10 < th dose dependent rect. 4 4
106 179.59 temperature 25.0 90 < th dose dependent rect. 4 3
108 179.59 radiation 1.0 10 < th dose dependent rect. 6 8
112 179.63 radiation 1.0 30 > th dose independent rect. 6 6
113 179.63 humidity 50.0 30 > th dose independent rect. 6 19
118 179.68 temperature 25.0 90 < th dose dependent rect. 4 1
124 179.70 atmosphere 995.0 30 > th dose dependent rect. 1 5
138 179.75 wind 1.0 270 < th dose dependent rect. 11 17
139 179.76 wind 1.0 270 < th dose independent rect. 11 16
153 179.85 wind 1.0 270 < th dose dependent rect. 21 6
170 179.91 temperature 25.0 10 < th dose dependent rect. 6 1
199 180.01 radiation 40.0 90 < th dose independent rect. 6 19
204 180.03 atmosphere 1000.0 30 > th dose independent rect. 1 5
208 180.05 radiation 1.0 90 < th dose independent rect. 1 7
212 180.06 wind 1.0 270 < th dose independent rect. 17 10
215 180.07 radiation 1.0 90 < th dose independent rect. 7 3
248 180.16 wind 1.0 270 < th dose dependent rect. 16 11
250 180.16 wind 1.0 270 < th dose dependent rect. 8 20
252 180.17 wind 1.0 270 < th dose dependent rect. 18 9
254 180.18 humidity 50.0 90 > th dose independent rect. 7 22
268 180.22 radiation 1.0 90 > th dose independent sin 3 NA
293 180.30 atmosphere 1015.0 1440 < th dose independent rect. 2 5
299 180.31 temperature 25.0 30 < th dose independent rect. 24 7
305 180.33 humidity 60.0 90 > th dose independent rect. 9 19
317 180.37 wind 7.0 1440 > th dose independent rect. 4 1
321 180.37 wind 7.0 1440 > th dose dependent rect. 4 1
327 180.38 humidity 50.0 10 > th dose independent rect. 9 20
332 180.40 radiation 10.0 30 < th dose independent rect. 1 5
347 180.45 radiation 40.0 270 < th dose independent rect. 6 22
350 180.46 radiation 10.0 30 < th dose independent sin 8 NA
362 180.49 precipitation 0.1 90 > th dose independent rect. 7 1
372 180.49 precipitation 0.1 90 > th dose dependent rect. 7 1
387 180.53 precipitation 0.1 10 > th dose independent rect. 5 3
411 180.53 precipitation 0.1 10 > th dose dependent rect. 5 3
444 180.59 precipitation 0.1 30 < th dose independent rect. 1 5
445 180.59 precipitation 0.1 30 < th dose dependent rect. 1 5
476 180.66 humidity 90.0 10 < th dose independent rect. 6 6
497 180.71 humidity 60.0 90 < th dose dependent rect. 12 1
514 180.74 wind 9.0 30 < th dose independent rect. 6 19
537 180.77 wind 5.0 30 < th dose independent rect. 1 5
551 180.80 temperature 20.0 30 < th dose independent rect. 5 5
573 180.85 humidity 60.0 10 < th dose dependent rect. 12 3
576 180.86 wind 9.0 1440 < th dose independent rect. 2 5
577 180.86 temperature 10.0 1440 > th dose independent rect. 2 5
580 180.86 temperature 30.0 1440 < th dose independent rect. 2 5
584 180.86 humidity 50.0 1440 > th dose independent rect. 2 5
589 180.86 atmosphere 995.0 1440 > th dose independent rect. 2 5
590 180.86 radiation 40.0 1440 < th dose independent rect. 2 5
596 180.86 temperature 10.0 1440 > th dose independent rect. 7 19
620 180.92 wind 7.0 30 < th dose independent rect. 6 6
628 180.94 humidity 60.0 90 < th dose independent rect. 12 1
635 180.96 atmosphere 1015.0 30 < th dose independent rect. 6 19
636 180.96 radiation 40.0 30 < th dose dependent rect. 1 5
650 180.98 temperature 10.0 30 > th dose independent rect. 1 5
653 180.98 humidity 50.0 30 > th dose independent rect. 1 5
657 180.98 atmosphere 1010.0 30 < th dose independent rect. 1 5
662 180.98 temperature 10.0 30 > th dose independent rect. 6 19
682 181.03 precipitation 0.1 30 < th dose independent rect. 6 19
688 181.03 precipitation 0.1 30 < th dose dependent rect. 6 19
706 181.07 wind 7.0 30 < th dose independent rect. 12 18
728 181.11 temperature 30.0 270 < th dose dependent rect. 22 8
754 181.17 humidity 80.0 90 > th dose independent rect. 19 9
808 181.27 wind 1.0 90 > th dose independent rect. 5 2
869 181.31 humidity 80.0 90 > th dose independent rect. 8 20
888 181.33 wind 9.0 10 < th dose dependent rect. 1 5
892 181.33 wind 9.0 30 < th dose dependent rect. 6 19
972 181.41 temperature 30.0 270 < th dose dependent rect. 1 2