BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0588500 Os11g0588500|Os11g0588500
         (95 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G41210.1  | chr5:16492550-16493884 REVERSE LENGTH=246          108   6e-25
AT5G41220.1  | chr5:16494560-16496969 REVERSE LENGTH=591          107   2e-24
AT5G41240.1  | chr5:16498293-16500811 REVERSE LENGTH=592          104   9e-24

>AT5G41210.1 | chr5:16492550-16493884 REVERSE LENGTH=246
          Length = 245

 Score =  108 bits (270), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 60/74 (81%)

Query: 1   MWLKGNAKFLLGNPQLSMADLSLVCEIMQLEVLSDSERDRILGPHEKIRGWVQNVKKATS 60
            WLKGNAKFLLG+ Q S+ADLSLVCE+MQL+VL D +R R+L  H+K+  W++N KKAT 
Sbjct: 151 FWLKGNAKFLLGSNQPSIADLSLVCELMQLQVLDDKDRLRLLSTHKKVEQWIENTKKATM 210

Query: 61  PHFDEVHELILKVK 74
           PHFDE HE++ KVK
Sbjct: 211 PHFDETHEILFKVK 224



>AT5G41220.1 | chr5:16494560-16496969 REVERSE LENGTH=591
          Length = 590

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 67/94 (71%), Gaps = 6/94 (6%)

Query: 1   MWLKGNAKFLLGNPQLSMADLSLVCEIMQLEVLSDSERDRILGPHEKIRGWVQNVKKATS 60
            WLKGNA FLLG+ Q S+ADLSLVCE+ QL+VL D +R R+L PH+ +  W++N +KAT 
Sbjct: 150 FWLKGNAMFLLGSNQPSIADLSLVCELTQLQVLDDKDRLRLLSPHKNVEQWIENTRKATM 209

Query: 61  PHFDEVHELILKVKTRTAATLGSELSKDLKTASK 94
           PHFDEVHE++ + K R       +  +++ TASK
Sbjct: 210 PHFDEVHEVLFRAKDRC------QKQREMATASK 237



>AT5G41240.1 | chr5:16498293-16500811 REVERSE LENGTH=592
          Length = 591

 Score =  104 bits (259), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 68/94 (72%), Gaps = 6/94 (6%)

Query: 1   MWLKGNAKFLLGNPQLSMADLSLVCEIMQLEVLSDSERDRILGPHEKIRGWVQNVKKATS 60
            WLKG+AKFLLG  Q S+ADLSLVCE+MQL+VL D +R R+L PH+K+  W+++ +KAT 
Sbjct: 150 FWLKGSAKFLLGGKQPSIADLSLVCELMQLQVLDDKDRLRLLSPHKKVEQWIESTRKATM 209

Query: 61  PHFDEVHELILKVKTRTAATLGSELSKDLKTASK 94
           PH DEVHE++ + K R       +  +++ TASK
Sbjct: 210 PHSDEVHEVLFRAKDRF------QKQREMATASK 237



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,903,244
Number of extensions: 63624
Number of successful extensions: 197
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 3
Length of query: 95
Length of database: 11,106,569
Length adjustment: 65
Effective length of query: 30
Effective length of database: 9,324,529
Effective search space: 279735870
Effective search space used: 279735870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 105 (45.1 bits)