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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0579100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.49 (0.0447) R2 : 0.781
β1 : 2.02 (0.164) R2dD : 0.0672 R2D : -0.00309
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.4 (0.0916) R2dE : 0.688 R2E : 0.632
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.21 (0.0955) R2dN8 : 0.112 R2N8 : 0.0438
σ : 0.836
deviance : 322.27
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.7
memory length : 223
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.47
open length of G : 9.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
302.84 0.818 5.5 1.75 0.635 -3.13 -1.7 -2.08 1.22 2.61 20.6 248 5 9.59
308.14 0.818 5.5 1.8 0.854 -2.85 0.369 -- 1.19 1.05 20.75 223 5.37 9.52
305.53 0.814 5.49 1.8 0.701 -2.99 -- -0.907 1.21 1.22 20.6 242 5.24 9.52
307.92 0.817 5.49 1.85 0.892 -2.85 -- -- 1.25 0.98 20.74 238 5.3 9.52
320.85 0.834 5.52 1.86 -- -3.25 -- -0.867 1.15 -- 20.41 223 5.52 9.64
424.54 0.966 5.57 1.57 3.79 -- 1.56 -- 1.06 0.414 -- -- -- --
434.95 0.977 5.58 1.51 3.78 -- -- -- 1.06 0.445 -- -- -- --
322.27 0.836 5.49 2.02 -- -3.4 -- -- 1.21 -- 20.7 223 5.47 9.8
394.43 0.925 5.53 -- 1.19 -2.55 -- -- 1.02 0.847 20.7 224 5.42 9.51
1333.15 1.71 5.51 1.64 -- -- -- -- 1.12 -- -- -- -- --
494.87 1.04 5.62 -- 3.8 -- -- -- 0.889 0.465 -- -- -- --
416.14 0.95 5.49 -- -- -3.44 -- -- 1.11 -- 20.58 243 5.28 9.63
1403.85 1.75 5.55 -- -- -- -- -- 0.937 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 315.55 temperature 10.0 270 > th dose dependent rect. 5 9
2 319.17 temperature 20.0 10 > th dose dependent rect. 7 9
3 320.21 temperature 20.0 270 > th dose independent rect. 5 9
22 328.61 wind 7.0 4320 > th dose dependent rect. 15 1
41 333.11 temperature 25.0 30 > th dose independent rect. 7 9
58 336.75 precipitation 0.1 270 < th dose independent rect. 15 14
59 336.75 precipitation 0.1 270 < th dose dependent rect. 15 14
62 337.08 wind 7.0 4320 > th dose independent rect. 15 4
66 337.59 wind 7.0 4320 < th dose independent rect. 15 4
84 339.20 wind 7.0 4320 < th dose independent rect. 15 2
91 339.83 wind 7.0 4320 > th dose dependent rect. 15 4
106 341.59 temperature 15.0 270 > th dose independent rect. 15 14
114 342.31 humidity 60.0 270 > th dose dependent rect. 18 7
118 342.76 wind 1.0 270 > th dose independent rect. 14 15
121 342.90 radiation 1.0 270 > th dose independent rect. 15 14
123 343.08 radiation 1.0 270 > th dose independent rect. 15 4
133 343.21 radiation 30.0 43200 < th dose independent rect. 17 4
135 343.37 temperature 10.0 90 > th dose dependent rect. 20 19
158 345.06 temperature 10.0 10 > th dose dependent rect. 20 20
168 345.88 wind 7.0 270 < th dose independent rect. 14 15
187 347.09 radiation 40.0 270 < th dose independent rect. 14 15
192 347.26 precipitation 0.1 270 < th dose independent rect. 5 10
193 347.26 precipitation 0.1 270 < th dose dependent rect. 5 10
223 347.78 wind 7.0 270 < th dose independent rect. 15 3
224 347.78 temperature 10.0 270 > th dose dependent rect. 15 3
226 347.80 temperature 30.0 10 < th dose dependent rect. 4 10
227 347.82 radiation 1.0 270 < th dose dependent rect. 12 14
229 347.83 atmosphere 1015.0 270 < th dose independent rect. 5 10
233 347.86 wind 9.0 270 < th dose independent rect. 5 9
238 347.92 atmosphere 995.0 270 > th dose independent rect. 5 9
243 347.98 wind 1.0 270 > th dose independent rect. 15 2
251 348.14 radiation 40.0 270 < th dose independent rect. 15 2
255 348.18 wind 7.0 270 < th dose independent rect. 14 5
260 348.27 precipitation 0.1 270 < th dose independent rect. 15 2
261 348.27 precipitation 0.1 270 < th dose dependent rect. 15 2
266 348.42 wind 1.0 270 > th dose independent rect. 14 5
274 348.71 precipitation 0.1 270 < th dose independent rect. 14 5
275 348.71 precipitation 0.1 270 < th dose dependent rect. 14 5
280 348.77 temperature 30.0 10 < th dose dependent rect. 4 8
281 348.78 temperature 10.0 270 > th dose independent rect. 15 2
283 348.78 atmosphere 1010.0 270 < th dose independent rect. 15 2
285 348.78 temperature 10.0 270 > th dose independent rect. 17 22
287 348.92 radiation 20.0 10 < th dose dependent rect. 4 16
291 349.18 temperature 10.0 270 > th dose dependent rect. 14 5
300 349.38 wind 9.0 270 < th dose independent rect. 17 22
308 349.49 radiation 1.0 270 < th dose dependent rect. 5 21
338 350.24 radiation 40.0 90 < th dose dependent rect. 3 16
350 350.52 atmosphere 995.0 270 > th dose independent rect. 15 2
353 350.64 radiation 1.0 270 < th dose dependent sin 15 NA
355 350.68 atmosphere 995.0 270 > th dose dependent rect. 15 2
364 350.87 wind 7.0 4320 > th dose independent rect. 13 18
370 350.94 wind 9.0 270 < th dose independent rect. 19 19
375 351.03 temperature 10.0 270 > th dose independent rect. 14 5
377 351.03 atmosphere 1010.0 270 < th dose independent rect. 14 5
380 351.03 temperature 10.0 270 > th dose independent rect. 19 19
381 351.03 atmosphere 995.0 270 > th dose independent rect. 19 19
382 351.05 wind 7.0 4320 > th dose independent rect. 13 12
403 351.40 wind 7.0 4320 < th dose independent rect. 13 18
416 351.60 wind 7.0 4320 < th dose independent rect. 13 15
422 351.66 wind 7.0 4320 < th dose independent rect. 13 12
428 351.72 radiation 1.0 270 > th dose independent rect. 5 9
459 352.06 temperature 25.0 10 > th dose dependent rect. 22 18
468 352.16 temperature 25.0 10 > th dose dependent rect. 1 15
470 352.19 radiation 40.0 270 < th dose independent rect. 14 5
471 352.22 radiation 1.0 270 < th dose independent rect. 17 9
485 352.39 temperature 30.0 10 < th dose dependent rect. 4 15
494 352.50 temperature 10.0 10 > th dose dependent rect. 16 5
496 352.51 temperature 25.0 10 > th dose dependent rect. 20 20
502 352.57 wind 5.0 4320 > th dose dependent rect. 18 1
528 352.81 temperature 10.0 270 > th dose dependent rect. 14 15
548 352.97 radiation 1.0 270 < th dose independent rect. 12 14
569 353.16 atmosphere 995.0 270 > th dose independent rect. 18 21
578 353.27 radiation 20.0 1440 < th dose independent rect. 12 20
587 353.32 temperature 30.0 270 < th dose independent rect. 18 8
590 353.36 atmosphere 995.0 270 > th dose independent rect. 14 5
593 353.40 humidity 90.0 270 < th dose independent rect. 15 3
597 353.42 humidity 70.0 270 > th dose independent rect. 18 8
610 353.53 temperature 10.0 90 > th dose dependent rect. 16 15
619 353.74 radiation 1.0 270 > th dose independent sin 15 NA
621 353.79 humidity 60.0 10 > th dose dependent rect. 20 8
622 353.82 precipitation 0.1 270 < th dose independent rect. 2 17
624 353.82 precipitation 0.1 270 < th dose dependent rect. 2 17
639 354.04 radiation 20.0 1440 < th dose independent rect. 12 5
641 354.08 radiation 20.0 1440 < th dose independent rect. 12 15
645 354.10 radiation 20.0 1440 < th dose independent rect. 12 17
650 354.13 radiation 20.0 1440 < th dose independent rect. 12 13
691 354.44 radiation 10.0 10 < th dose independent rect. 4 16
721 354.62 humidity 50.0 270 > th dose independent rect. 19 19
724 354.63 atmosphere 995.0 270 > th dose independent rect. 14 15
728 354.64 temperature 30.0 10 < th dose dependent rect. 4 13
731 354.69 wind 7.0 10 < th dose independent rect. 16 4
732 354.69 radiation 20.0 30 < th dose independent rect. 2 18
742 354.82 radiation 20.0 1440 < th dose independent sin 14 NA
765 355.08 temperature 10.0 10 > th dose dependent rect. 16 15
774 355.17 wind 1.0 270 > th dose independent rect. 2 17
789 355.32 atmosphere 1015.0 270 < th dose independent rect. 19 19
830 355.68 atmosphere 995.0 270 > th dose dependent rect. 14 5
855 355.81 precipitation 0.1 10 < th dose independent rect. 16 4
856 355.81 precipitation 0.1 10 < th dose dependent rect. 16 4
873 355.89 wind 7.0 4320 > th dose dependent rect. 15 10
892 356.06 radiation 1.0 270 < th dose independent sin 15 NA
893 356.07 humidity 90.0 270 < th dose independent rect. 14 5
897 356.12 wind 1.0 10 > th dose independent rect. 16 4
900 356.14 wind 1.0 270 > th dose dependent rect. 15 2
903 356.19 humidity 70.0 10 > th dose dependent rect. 20 6
921 356.31 wind 7.0 4320 > th dose independent sin 17 NA
922 356.31 wind 9.0 43200 < th dose independent rect. 12 1
979 356.58 radiation 20.0 1440 < th dose independent rect. 14 3
983 356.61 radiation 40.0 90 < th dose dependent rect. 15 4
990 356.64 radiation 40.0 10 < th dose dependent rect. 16 16