BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0579100 Os11g0579100|AK100243
         (852 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G50950.2  | chr3:18936127-18938685 FORWARD LENGTH=853           52   1e-06

>AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853
          Length = 852

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 17/212 (8%)

Query: 251 AVVLCTNDSKMAKYCCSNDSANDGPQIIYSLVDIYLNRALALLSHSYGYEEGHLKEILRN 310
           +V++ T    +AK   + D     P+++       L   +A  ++    E   L+++ + 
Sbjct: 291 SVIVTTRSESVAKRVQARDDKTHRPELLSPDNSWLLFCNVAFAANDGTCERPELEDVGKE 350

Query: 311 ILAKCCLDVFCMKMLLHALYYNPDMTKHQLQFLNISLGKEFTDHGR-----QDRIMA--- 362
           I+ KC      +K +   L    D   H+ +     + + F D  R      D +M+   
Sbjct: 351 IVTKCKGLPLTIKAV-GGLLLCKDHVYHEWR----RIAEHFQDELRGNTSETDNVMSSLQ 405

Query: 363 FCYQALPNSYKNCLWYSTIFARGSGVRRASLIRRWIAQGLIAQVNQSSAEDEAGHCFEAM 422
             Y  LP+  K+C+   +++     + +  L+  WI +G +   N  SA +    CF  +
Sbjct: 406 LSYDELPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWRNGRSATESGEDCFSGL 465

Query: 423 HSQKLI--VSSGLSGTRKVKSCTVHPVVSGLI 452
            ++ LI  V    SGT  + +C +H +V  L+
Sbjct: 466 TNRCLIEVVDKTYSGT--IITCKIHDMVRDLV 495



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,755,137
Number of extensions: 746731
Number of successful extensions: 2791
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2809
Number of HSP's successfully gapped: 1
Length of query: 852
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 745
Effective length of database: 8,173,057
Effective search space: 6088927465
Effective search space used: 6088927465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)