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Os11g0573200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Gag polyprotein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0182) R2 : 0.0262
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.134 (0.0382) R2dN8 : 0.0338 R2N8 : 0.0262
σ : 0.342
deviance : 53.67
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.43 0.259 11.3 0.217 0.368 -0.609 0.565 0.452 0.213 2.06 26.15 6027 -- --
30.36 0.257 11.4 0.0651 0.349 -0.57 0.553 -- 0.138 1.99 27.6 6050 -- --
31.03 0.259 11.3 0.368 0.343 -0.71 -- 1.62 0.186 2.44 28.69 6049 -- --
31.51 0.261 11.4 0.0409 0.375 -0.554 -- -- 0.145 2.29 27.41 6040 -- --
37.73 0.286 11.3 0.753 -- -0.854 -- 3.72 0.154 -- 29.59 6103 -- --
44.15 0.311 11.4 -0.131 0.372 -- 0.47 -- 0.113 2.22 -- -- -- --
44.95 0.314 11.4 -0.144 0.374 -- -- -- 0.11 2.4 -- -- -- --
38.91 0.292 11.4 -0.0315 -- -0.882 -- -- 0.122 -- 27.05 7507 -- --
31.55 0.262 11.4 -- 0.375 -0.547 -- -- 0.134 2.31 27.56 6040 -- --
53.23 0.341 11.4 -0.128 -- -- -- -- 0.12 -- -- -- -- --
45.5 0.316 11.4 -- 0.372 -- -- -- 0.126 2.4 -- -- -- --
38.93 0.292 11.4 -- -- -0.887 -- -- 0.125 -- 27.05 7507 -- --
53.67 0.342 11.4 -- -- -- -- -- 0.134 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.75 temperature 20 720 > th dose dependent rect. 4 5
4 30.35 humidity 60 14400 < th dose independent rect. 17 1
7 30.45 temperature 10 270 > th dose dependent rect. 3 14
10 30.65 humidity 70 1440 > th dose independent rect. 16 3
11 30.71 humidity 60 14400 > th dose independent rect. 17 1
14 30.79 humidity 70 1440 > th dose independent rect. 16 13
17 30.80 humidity 70 1440 > th dose independent rect. 16 5
21 30.80 humidity 70 1440 > th dose independent rect. 16 10
27 30.81 humidity 60 14400 < th dose dependent rect. 16 2
30 30.84 temperature 10 720 > th dose dependent rect. 3 6
34 30.86 humidity 70 1440 > th dose independent sin 13 NA
58 31.10 humidity 60 1440 > th dose dependent rect. 18 1
60 31.12 temperature 30 14400 > th dose independent rect. 15 3
79 31.15 temperature 30 14400 < th dose independent rect. 15 14
82 31.15 temperature 20 720 > th dose dependent sin 6 NA
85 31.16 temperature 30 14400 < th dose independent rect. 15 4
98 31.17 humidity 80 1440 < th dose dependent rect. 18 1
99 31.17 temperature 25 1440 > th dose dependent rect. 17 2
100 31.17 temperature 25 1440 > th dose dependent rect. 15 4
104 31.18 temperature 25 1440 > th dose dependent rect. 12 7
105 31.18 humidity 70 14400 < th dose dependent rect. 17 14
111 31.21 humidity 70 14400 < th dose dependent rect. 17 5
137 31.23 temperature 30 14400 > th dose dependent rect. 17 1
145 31.24 humidity 60 14400 > th dose independent rect. 17 15
165 31.26 temperature 30 720 < th dose independent rect. 17 19
180 31.33 temperature 30 1440 < th dose independent sin 6 NA
181 31.33 humidity 60 14400 > th dose independent rect. 17 7
196 31.34 humidity 60 14400 > th dose independent rect. 17 12
207 31.34 temperature 25 1440 > th dose dependent rect. 6 13
209 31.35 temperature 30 1440 > th dose independent sin 6 NA
215 31.35 humidity 60 14400 > th dose independent rect. 17 9
249 31.37 radiation 40 1440 < th dose dependent rect. 17 7
255 31.38 temperature 30 1440 < th dose independent rect. 8 4
272 31.38 temperature 30 1440 < th dose independent rect. 20 16
277 31.38 temperature 30 1440 < th dose independent rect. 14 23
285 31.39 temperature 30 1440 < th dose independent rect. 22 14
304 31.41 temperature 30 1440 > th dose independent rect. 9 3
308 31.41 temperature 30 1440 > th dose independent rect. 14 22
328 31.41 temperature 20 720 > th dose dependent rect. 23 16
344 31.43 temperature 30 14400 > th dose independent sin 12 NA
402 31.44 temperature 30 1440 < th dose independent rect. 3 14
404 31.44 temperature 30 1440 < th dose independent rect. 1 16
405 31.44 temperature 30 1440 > th dose independent rect. 18 20
408 31.44 temperature 25 1440 > th dose dependent rect. 15 1
414 31.45 temperature 30 1440 < th dose independent rect. 8 9
420 31.45 temperature 30 1440 < th dose independent rect. 23 18
430 31.46 temperature 30 14400 < th dose independent sin 12 NA
470 31.47 temperature 25 1440 > th dose dependent sin 22 NA
474 31.47 radiation 40 1440 < th dose dependent rect. 17 12
562 31.50 temperature 30 1440 > th dose independent rect. 18 23
563 31.50 temperature 25 1440 > th dose dependent rect. 12 2
577 31.51 temperature 30 1440 < th dose independent rect. 10 1
612 31.51 temperature 30 1440 < th dose independent rect. 3 20
643 31.52 temperature 30 1440 < th dose independent no NA NA
702 31.52 temperature 30 1440 < th dose independent rect. 8 20
717 31.52 temperature 30 1440 < th dose independent rect. 23 22
747 31.53 humidity 60 14400 < th dose independent rect. 17 15
783 31.54 temperature 30 1440 > th dose independent no NA NA
883 31.54 radiation 20 1440 < th dose dependent rect. 17 9
937 31.57 radiation 20 1440 < th dose dependent rect. 17 1
965 31.59 temperature 30 1440 < th dose independent rect. 15 2
992 31.61 temperature 30 1440 < th dose independent rect. 11 23