BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0573200 Os11g0573200|AK059001
         (129 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G43590.1  | chr3:15509753-15512255 FORWARD LENGTH=552           78   1e-15
AT3G43490.1  | chr3:15398859-15400079 FORWARD LENGTH=261           67   2e-12

>AT3G43590.1 | chr3:15509753-15512255 FORWARD LENGTH=552
          Length = 551

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 2/81 (2%)

Query: 19  GTAQSVLTEDGPDVP-LSDNIVLRKLLRIPRYFDPGETLLETCFNCGEEGHVAVNCPM-E 76
           G    V   D P     + N+VL+KLLR  RYFDP +    +C++CGE+GH + NCP   
Sbjct: 126 GEDDEVERSDEPKTEETASNLVLKKLLRGARYFDPPDAGWVSCYSCGEQGHTSFNCPTPT 185

Query: 77  KRKRPCFVCGLFGHNSKQCTQ 97
           KR++PCF+CG   H +KQC++
Sbjct: 186 KRRKPCFICGSLEHGAKQCSK 206



>AT3G43490.1 | chr3:15398859-15400079 FORWARD LENGTH=261
          Length = 260

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 14  QEGQTGTAQSVLTEDGPDVPLSDNIVLRKLLRIPRYFDPGETLLETCFNCGEEGHVAVNC 73
           ++ +    + V+  +  D   + N V+ KLLR  RYFDP +    TC++CGE+ H+ V+C
Sbjct: 99  RQDEDNMVEDVVRGEEEDGETTSNSVMTKLLRGARYFDPLDAGWVTCYSCGEKDHITVSC 158

Query: 74  P-MEKRKRPCFVCGLFGHNSKQCTQV 98
           P +   ++ CF+C    H ++QCT+V
Sbjct: 159 PTLTNCRKSCFICASLEHGARQCTKV 184



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,906,619
Number of extensions: 116479
Number of successful extensions: 444
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 2
Length of query: 129
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 42
Effective length of database: 8,721,377
Effective search space: 366297834
Effective search space used: 366297834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)