Os11g0572700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Carotenoid isomerase (Fragment).
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Os11g0572700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Carotenoid isomerase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.12 | 0.27 | 10.7 | -1.02 | 0.455 | 0.655 | -0.373 | 0.185 | -0.565 | 22.3 | 25.4 | 101 | -- | -- |
| 33.12 | 0.268 | 10.7 | -1.04 | 0.449 | 0.665 | -0.384 | -- | -0.567 | 22.3 | 25.4 | 113 | -- | -- |
| 33.67 | 0.27 | 10.7 | -0.993 | 0.452 | 0.64 | -- | 0.302 | -0.564 | 22.3 | 25.3 | 109 | -- | -- |
| 33.72 | 0.27 | 10.7 | -1.03 | 0.454 | 0.671 | -- | -- | -0.57 | 22.3 | 25.33 | 108 | -- | -- |
| 39.85 | 0.294 | 10.7 | -1.08 | -- | 0.701 | -- | 0.104 | -0.607 | -- | 23.94 | 644 | -- | -- |
| 40.82 | 0.3 | 10.7 | -0.926 | 0.494 | -- | -0.228 | -- | -0.528 | 20.3 | -- | -- | -- | -- |
| 40.97 | 0.3 | 10.7 | -0.919 | 0.496 | -- | -- | -- | -0.528 | 20.2 | -- | -- | -- | -- |
| 39.77 | 0.294 | 10.7 | -1.07 | -- | 0.72 | -- | -- | -0.619 | -- | 23.73 | 595 | -- | -- |
| 60.19 | 0.361 | 10.7 | -- | 0.451 | 0.432 | -- | -- | -0.429 | 21.2 | 26.3 | 109 | -- | -- |
| 54.49 | 0.345 | 10.7 | -0.923 | -- | -- | -- | -- | -0.534 | -- | -- | -- | -- | -- |
| 63.22 | 0.372 | 10.7 | -- | 0.501 | -- | -- | -- | -0.425 | 20 | -- | -- | -- | -- |
| 68.27 | 0.385 | 10.7 | -- | -- | 0.542 | -- | -- | -0.461 | -- | 24.9 | 516 | -- | -- |
| 76.96 | 0.409 | 10.7 | -- | -- | -- | -- | -- | -0.431 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 11 |
| 9 | 31.99 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 17 |
| 18 | 32.19 | temperature | 15 | 270 | > th | dose dependent | sin | 1 | NA |
| 60 | 32.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 86 | 32.89 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 242 | 33.22 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 243 | 33.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 262 | 33.23 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 371 | 33.38 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 509 | 33.52 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 649 | 33.64 | temperature | 25 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 650 | 33.65 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 10 |
| 826 | 33.83 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 18 |
| 830 | 33.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 14 |
| 839 | 33.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 12 |
| 871 | 33.87 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 873 | 33.87 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 17 |