BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0572700 Os11g0572700|Os11g0572700
(602 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G06820.1 | chr1:2093145-2096220 REVERSE LENGTH=596 743 0.0
AT1G57770.1 | chr1:21395254-21398135 FORWARD LENGTH=575 174 1e-43
>AT1G06820.1 | chr1:2093145-2096220 REVERSE LENGTH=596
Length = 595
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/502 (72%), Positives = 402/502 (80%), Gaps = 39/502 (7%)
Query: 124 YDAIVVGSGIGGMVAATQLAAKGARVLVLEKYVIPGGSSGYYRRDGFTFDVGSSVMFGFS 183
YDAIV+GSGIGG+VAATQLA K ARVLVLEKY+IPGGSSG+Y RDG+TFDVGSSVMFGFS
Sbjct: 78 YDAIVIGSGIGGLVAATQLAVKEARVLVLEKYLIPGGSSGFYERDGYTFDVGSSVMFGFS 137
Query: 184 DKGNLNLITQALEAVGHKMEVIPDPSTVHFHLPGDLSVLVHREYDDFVTELVNKFPHEKE 243
DKGNLNLITQAL+AVG KMEVIPDP+TVHFHLP +LSV +HREYDDF+ EL +KFPHEKE
Sbjct: 138 DKGNLNLITQALKAVGRKMEVIPDPTTVHFHLPNNLSVRIHREYDDFIAELTSKFPHEKE 197
Query: 244 GILKFYGTCWK---------------------------------------NAGDIARKFI 264
GIL FYG CWK NAG IARK+I
Sbjct: 198 GILGFYGDCWKIFNSLNSLELKSLEEPIYLFGQFFQKPLECLTLAYYLPQNAGAIARKYI 257
Query: 265 KDQQLLSFIDAECFIVSTVNALQTPMINASMVLCDRHFXXXXXXXXXXXXXAMSLADGLV 324
KD QLLSFIDAECFIVSTVNALQTPMINASMVLCDRH+ A SLA+GLV
Sbjct: 258 KDPQLLSFIDAECFIVSTVNALQTPMINASMVLCDRHYGGINYPVGGVGGIAKSLAEGLV 317
Query: 325 DKGSEIRYKANVTNVILENGKAVGVRLSNGKEFFAKTVISNATRWDTFGXXXXXXXXXXX 384
D+GSEI+YKANV ++IL++GKAVGVRL++G+EFFAKT+ISNATRWDTFG
Sbjct: 318 DQGSEIQYKANVKSIILDHGKAVGVRLADGREFFAKTIISNATRWDTFGKLLKGEKLPKE 377
Query: 385 XXNFQKNYVKAPSFLSIHMGVKASVLPADTDCHHFVLEDDWANLEKPYGSIFLSIPTVLD 444
NFQK YVKAPSFLSIHMGVKA VLP DTDCHHFVLEDDW NLE+PYGSIFLSIPT+LD
Sbjct: 378 EENFQKVYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWKNLEEPYGSIFLSIPTILD 437
Query: 445 PSLAPEGHHILHIFTTAGIEDWEGLSRKDYEKKKELVATEIIKRLEKKLFPGLQDSIVLK 504
SLAP+G HILHIFTT+ IEDWEGL K+YE KKE VA II+RLEKKLFPGL SI K
Sbjct: 438 SSLAPDGRHILHIFTTSSIEDWEGLPPKEYEAKKEDVAARIIQRLEKKLFPGLSSSITFK 497
Query: 505 EVGSPKTHRRFLARNDGTYGPMPRGKPKGLLAMPFNTTSIDGLYCVGDSCFPGQGVIAVA 564
EVG+P+THRRFLAR+ GTYGPMPRG PKGLL MPFNTT+IDGLYCVGDSCFPGQGVIAVA
Sbjct: 498 EVGTPRTHRRFLARDKGTYGPMPRGTPKGLLGMPFNTTAIDGLYCVGDSCFPGQGVIAVA 557
Query: 565 FSGIMCAHRVAADIGLEQRSPV 586
FSG+MCAHRVAADIGLE++S V
Sbjct: 558 FSGVMCAHRVAADIGLEKKSRV 579
>AT1G57770.1 | chr1:21395254-21398135 FORWARD LENGTH=575
Length = 574
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 149/523 (28%), Positives = 231/523 (44%), Gaps = 90/523 (17%)
Query: 125 DAIVVGSGIGGMVAATQLAAKGARVLVLEKYVIPGGSSGYYRRDGFTFDVGSSVMFGFSD 184
D +V+GSGIGG+ LA V+VLE + PGG++ + G+ FD G S+ G
Sbjct: 54 DVVVIGSGIGGLCCGALLARYDQDVIVLESHDHPGGAAHSFEIKGYKFDSGPSLFSGLQS 113
Query: 185 KG-NLNLITQALEAVGHK---------MEVIPD---------------------PSTVH- 212
+G N + Q L+A+G M +P+ PS V
Sbjct: 114 RGPQANPLAQVLDALGESFPCKKYDSWMVYLPEGDFLSRIGPTDFFKDLEKYAGPSAVQE 173
Query: 213 --------------------FHLPGDLSVL---VHREYDDFVTELVNKFPHEKEGILKFY 249
+ GDL VL R + + P G K
Sbjct: 174 WEKLLGAILPLSSAAMALPPLSIRGDLGVLSTAAARYAPSLLKSFIKMGPKGALGATKLL 233
Query: 250 GTCWKNAGDIARKF-IKDQQLLSFIDAECFIVSTVNALQTPMINASMVLCDRHFXXXXXX 308
+ +I +KD + ++ID F+++ V + +++A M+ +
Sbjct: 234 ----RPFSEIVDSLELKDPFIRNWIDLLAFLLAGVKS--DGILSAEMIYMFAEWYKPGCT 287
Query: 309 XXXXXXXAMSLADGLVDK----GSEIRYKANVTNVILENGKAVGVRLSNGKEFFA-KTVI 363
++ + LV G + K++V N+++ENGKAVGV+L NG+ A K V+
Sbjct: 288 LEYPIDGTGAVVEALVRGLEKFGGRLSLKSHVENIVIENGKAVGVKLRNGQFVRARKAVV 347
Query: 364 SNATRWDTFGXXXXXXXXXXXXXNFQKNYVK-------APSFLSIHMGVKASVLPADTDC 416
SNA+ WDT ++YVK SF+ +H+G A + D +
Sbjct: 348 SNASMWDTL--------KLLPPGALPESYVKGVNTTPQCESFMHLHLGFDAEGIADDLEI 399
Query: 417 HHFVLEDDWANLEKPYGSIFLSIPTVLDPSLAPEGHHILHIFT--TAGIEDWEGLSRK-- 472
HH V+ D ++ + +S+P+VL P+LAP G H+LH + T WEGL R+
Sbjct: 400 HHIVVNDWDRGVDADQNVVLISVPSVLSPNLAPPGKHVLHAYCPGTEPFGLWEGLDRRSA 459
Query: 473 DYEKKKELVATEIIKRLEKKLFPGLQ-DSIVLKEVGSPKTHRRFLARNDGTYGPMPRGKP 531
+Y+ K + + + +E+ L G + + + VG+P TH+RFL RN GTYGP
Sbjct: 460 EYKNLKSQRSEVMWRAVERALGLGFKREKCEVSLVGTPLTHQRFLRRNRGTYGPAIEA-- 517
Query: 532 KGLLAMPFNTTSIDGLYCVGDSCFPGQGVIAVAFSGIMCAHRV 574
G P ++T I L C GDS FPG GV AVA SG + A+ +
Sbjct: 518 -GKGTFPGHSTPIPQLLCCGDSTFPGIGVPAVAASGAIVANSL 559
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.139 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,357,115
Number of extensions: 476789
Number of successful extensions: 1124
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1122
Number of HSP's successfully gapped: 4
Length of query: 602
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 498
Effective length of database: 8,255,305
Effective search space: 4111141890
Effective search space used: 4111141890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)