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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0550100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.36 (0.033) R2 : 0.68
β1 : 2.89 (0.121) R2dD : 0.417 R2D : 0.182
β2 : 0.901 (0.0858) R2dC : 0.0777 R2C : -0.00191
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.45 (0.0703) R2dN8 : 0.402 R2N8 : 0.181
σ : 0.619
deviance : 174.92
__
_____
C
peak time of C : 6.54
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
161.58 0.597 4.36 2.73 0.896 0.335 0.602 2.56 1.46 6.41 71 4491 -- --
168.55 0.605 4.32 2.83 0.834 0.622 0.762 -- 1.64 6.29 73 5055 -- --
162.4 0.594 4.36 2.74 0.894 0.332 -- 2.63 1.46 6.52 70.99 4541 -- --
169.76 0.607 4.32 2.87 0.818 0.624 -- -- 1.64 6.39 73 5055 -- --
199.13 0.657 4.35 2.75 -- 0.828 -- 1.9 1.59 -- 71.32 4984 -- --
173.91 0.618 4.36 2.88 0.898 -- 0.65 -- 1.46 6.42 -- -- -- --
174.92 0.619 4.36 2.89 0.901 -- -- -- 1.45 6.54 -- -- -- --
201.42 0.661 4.32 2.88 -- 1.03 -- -- 1.74 -- 74 4993 -- --
366.8 0.892 4.34 -- 0.82 1.02 -- -- 1.52 6.34 88 6199 -- --
217.17 0.689 4.38 2.91 -- -- -- -- 1.47 -- -- -- -- --
394.86 0.93 4.44 -- 0.939 -- -- -- 1.13 6.36 -- -- -- --
397.2 0.928 4.29 -- -- 1.54 -- -- 1.9 -- 87.7 4885 -- --
440.69 0.98 4.45 -- -- -- -- -- 1.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 154.36 wind 1.0 14400 < th dose dependent rect. 8 1
2 154.76 wind 1.0 14400 < th dose independent rect. 8 1
3 155.28 radiation 40.0 10 < th dose independent rect. 4 21
5 155.39 wind 1.0 14400 < th dose dependent rect. 1 1
7 156.28 humidity 60.0 43200 < th dose independent rect. 11 1
13 156.97 humidity 70.0 43200 < th dose dependent rect. 9 1
15 157.11 wind 1.0 14400 < th dose dependent rect. 24 4
16 157.12 temperature 25.0 4320 < th dose independent rect. 3 5
17 157.13 radiation 40.0 10 < th dose dependent rect. 4 22
21 157.39 radiation 40.0 43200 > th dose independent rect. 13 19
23 157.42 humidity 60.0 43200 < th dose independent rect. 9 3
24 157.44 radiation 40.0 43200 > th dose independent rect. 13 3
26 157.44 temperature 25.0 4320 > th dose independent rect. 3 5
41 157.45 humidity 70.0 43200 < th dose dependent rect. 1 10
43 157.47 humidity 60.0 43200 < th dose dependent rect. 14 1
44 157.48 radiation 40.0 10 < th dose independent rect. 4 8
52 157.61 temperature 20.0 720 > th dose dependent rect. 4 2
53 157.62 wind 1.0 43200 < th dose dependent rect. 6 1
57 157.75 humidity 60.0 43200 < th dose independent rect. 24 12
61 157.77 humidity 60.0 43200 > th dose independent rect. 8 4
63 157.77 humidity 60.0 43200 > th dose independent rect. 24 12
79 157.95 radiation 20.0 43200 > th dose independent rect. 15 2
101 158.01 radiation 40.0 270 < th dose dependent rect. 3 8
104 158.06 humidity 60.0 43200 < th dose independent sin 8 NA
106 158.07 humidity 60.0 43200 < th dose dependent rect. 11 5
168 158.30 wind 3.0 14400 > th dose independent rect. 10 1
180 158.35 wind 1.0 14400 < th dose dependent rect. 24 10
229 158.59 humidity 60.0 43200 < th dose dependent rect. 2 14
237 158.60 radiation 40.0 43200 > th dose independent sin 14 NA
245 158.63 wind 1.0 14400 > th dose independent rect. 7 2
253 158.67 temperature 25.0 4320 > th dose independent rect. 6 1
259 158.69 humidity 70.0 43200 < th dose independent rect. 8 1
293 158.90 humidity 60.0 43200 < th dose dependent sin 1 NA
322 159.02 temperature 25.0 4320 < th dose independent rect. 6 1
330 159.04 temperature 25.0 10 > th dose independent rect. 24 9
331 159.04 wind 1.0 14400 < th dose dependent rect. 5 5
351 159.06 radiation 1.0 1440 < th dose dependent rect. 2 3
394 159.23 humidity 60.0 43200 < th dose dependent rect. 9 22
473 159.34 humidity 60.0 43200 < th dose dependent rect. 9 15
523 159.40 humidity 60.0 43200 < th dose dependent no NA NA
538 159.41 humidity 60.0 43200 < th dose dependent rect. 6 23
641 159.63 temperature 25.0 10 > th dose independent rect. 24 11
646 159.64 wind 7.0 14400 < th dose independent rect. 9 1
649 159.66 humidity 60.0 43200 < th dose independent rect. 16 20
653 159.69 humidity 70.0 43200 < th dose independent rect. 2 7
656 159.70 humidity 60.0 43200 < th dose dependent rect. 13 23
663 159.72 radiation 40.0 30 < th dose independent rect. 4 14
664 159.72 radiation 30.0 43200 < th dose dependent rect. 15 1
668 159.75 wind 3.0 14400 < th dose independent rect. 10 1
671 159.76 humidity 80.0 4320 < th dose independent rect. 20 2
678 159.79 wind 1.0 14400 < th dose dependent sin 6 NA
684 159.81 wind 5.0 14400 < th dose dependent rect. 10 1
711 159.91 humidity 60.0 43200 > th dose independent sin 9 NA
713 159.91 atmosphere 1000.0 10 > th dose independent rect. 4 22
714 159.91 radiation 10.0 43200 > th dose dependent rect. 15 1
740 159.94 atmosphere 1000.0 90 > th dose independent rect. 3 23
742 159.95 radiation 20.0 43200 > th dose dependent rect. 13 4
803 160.06 temperature 10.0 90 > th dose dependent rect. 4 21
815 160.10 atmosphere 995.0 43200 > th dose independent rect. 23 1
816 160.11 atmosphere 995.0 43200 > th dose independent rect. 21 1
835 160.12 atmosphere 995.0 43200 < th dose independent rect. 21 1
841 160.12 atmosphere 995.0 43200 > th dose independent rect. 21 3
848 160.12 atmosphere 995.0 43200 < th dose dependent rect. 21 1
892 160.16 temperature 25.0 14400 < th dose independent rect. 10 1
902 160.18 temperature 25.0 14400 > th dose independent rect. 10 1
940 160.27 wind 1.0 43200 > th dose independent rect. 4 4
949 160.30 precipitation 0.1 43200 < th dose independent rect. 12 1
951 160.30 precipitation 0.1 43200 < th dose dependent rect. 12 1
959 160.32 atmosphere 995.0 43200 < th dose independent rect. 21 11
967 160.33 temperature 20.0 270 > th dose independent rect. 3 6
968 160.33 radiation 10.0 43200 < th dose dependent rect. 6 2
971 160.33 radiation 40.0 43200 > th dose dependent rect. 13 19
972 160.34 atmosphere 995.0 43200 > th dose independent rect. 21 11
982 160.35 radiation 40.0 43200 > th dose dependent rect. 13 3