BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0550100 Os11g0550100|AK103015
         (158 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G46530.1  | chr3:17130739-17133246 REVERSE LENGTH=836           49   1e-06

>AT3G46530.1 | chr3:17130739-17133246 REVERSE LENGTH=836
          Length = 835

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 9/147 (6%)

Query: 11  LLSKLGNLLKEEYKLHRNLREEITFLKSELESMEAALLKVSEAPIDQPPDRQVKIWARDV 70
           ++ K+GN L EE  +   ++E++  LK+EL  +   L    +    +  D   K W++ V
Sbjct: 9   VVGKIGNYLIEEASMFMAVKEDLEELKTELTCIHGYL---KDVEAREREDEVSKEWSKLV 65

Query: 71  RDLSYDIEDSVDEFMVCIDSRTPNNSCSFGGFVYRSMDLLNRAKFRHKIGTDIKGIKSRI 130
            D +YD+ED +D + + ++ R+          + R  + + R    + I  DI+ +K RI
Sbjct: 66  LDFAYDVEDVLDTYHLKLEERSQRRG------LRRLTNKIGRKMDAYSIVDDIRILKRRI 119

Query: 131 KEVNDRHDRYKVDGVLTKPIGPTVDSL 157
            ++  + + Y + G+     G    SL
Sbjct: 120 LDITRKRETYGIGGLKEPQGGGNTSSL 146



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.137    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,340,911
Number of extensions: 130431
Number of successful extensions: 491
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 498
Number of HSP's successfully gapped: 5
Length of query: 158
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 68
Effective length of database: 8,639,129
Effective search space: 587460772
Effective search space used: 587460772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)