Os11g0544800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.-) (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os11g0544800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.-) (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.19 | 0.47 | 11.2 | -1.13 | 1.96 | 0.817 | 0.453 | 3.44 | -0.653 | 21.5 | 32.97 | 270 | -- | -- |
| 108.46 | 0.485 | 11.2 | -1.14 | 1.91 | 0.691 | 0.131 | -- | -0.647 | 21.6 | 20.8 | 390 | -- | -- |
| 100.85 | 0.468 | 11.3 | -1.14 | 1.96 | 0.81 | -- | 3.32 | -0.655 | 21.5 | 34.12 | 269 | -- | -- |
| 108.05 | 0.484 | 11.2 | -1.18 | 1.9 | 0.701 | -- | -- | -0.651 | 21.6 | 29.92 | 390 | -- | -- |
| 213.99 | 0.681 | 11.2 | -1.02 | -- | 1.74 | -- | 3.95 | -0.75 | -- | -31.3 | 971 | -- | -- |
| 116.32 | 0.506 | 11.2 | -1.17 | 1.94 | -- | 0.044 | -- | -0.613 | 21 | -- | -- | -- | -- |
| 116.33 | 0.505 | 11.2 | -1.17 | 1.94 | -- | -- | -- | -0.613 | 21 | -- | -- | -- | -- |
| 200.68 | 0.66 | 11.2 | -1.34 | -- | 1.95 | -- | -- | -0.878 | -- | -9.904 | 955 | -- | -- |
| 145.15 | 0.561 | 11.2 | -- | 1.89 | 0.705 | -- | -- | -0.539 | 21.6 | 35 | 385 | -- | -- |
| 332.63 | 0.852 | 11.2 | -1.16 | -- | -- | -- | -- | -0.625 | -- | -- | -- | -- | -- |
| 152.23 | 0.577 | 11.2 | -- | 1.94 | -- | -- | -- | -0.483 | 21 | -- | -- | -- | -- |
| 247.85 | 0.733 | 11.2 | -- | -- | 1.85 | -- | -- | -0.712 | -- | -8.928 | 941 | -- | -- |
| 368.37 | 0.896 | 11.1 | -- | -- | -- | -- | -- | -0.496 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.57 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 22 |
| 2 | 96.73 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 8 |
| 7 | 97.64 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 13 | 98.72 | temperature | 20.0 | 90 | < th | dose independent | rect. | 1 | 11 |
| 15 | 98.87 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 10 |
| 22 | 99.23 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 24 | 99.32 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 14 | 22 |
| 29 | 99.41 | radiation | 30.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 35 | 99.60 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 37 | 99.64 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 39 | 99.69 | radiation | 40.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 43 | 99.76 | wind | 5.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 54 | 99.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 56 | 99.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 8 |
| 58 | 100.01 | wind | 5.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 63 | 100.04 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 6 | 19 |
| 64 | 100.08 | wind | 1.0 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 79 | 100.21 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 18 |
| 84 | 100.26 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 9 |
| 96 | 100.38 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 97 | 100.38 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 19 |
| 101 | 100.42 | radiation | 40.0 | 270 | > th | dose dependent | rect. | 9 | 4 |
| 103 | 100.44 | wind | 5.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 104 | 100.44 | radiation | 30.0 | 270 | > th | dose dependent | no | NA | NA |
| 453 | 100.48 | wind | 1.0 | 14400 | > th | dose independent | rect. | 13 | 11 |
| 483 | 100.55 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 485 | 100.58 | wind | 1.0 | 14400 | > th | dose independent | rect. | 13 | 9 |
| 486 | 100.58 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 488 | 100.59 | wind | 1.0 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 492 | 100.60 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 496 | 100.65 | temperature | 20.0 | 90 | > th | dose independent | sin | 4 | NA |
| 504 | 100.68 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 514 | 100.73 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 7 |
| 517 | 100.74 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 17 | 18 |
| 518 | 100.75 | temperature | 20.0 | 90 | < th | dose independent | sin | 4 | NA |
| 545 | 100.80 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 22 |
| 553 | 100.82 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 6 |
| 567 | 100.87 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 19 |
| 569 | 100.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 571 | 100.88 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 573 | 100.90 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 575 | 100.90 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 576 | 100.91 | wind | 5.0 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 616 | 100.98 | wind | 5.0 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 617 | 100.98 | temperature | 30.0 | 90 | < th | dose independent | rect. | 6 | 19 |
| 621 | 100.99 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 16 |
| 623 | 101.00 | radiation | 40.0 | 270 | > th | dose independent | rect. | 13 | 23 |
| 642 | 101.07 | radiation | 40.0 | 90 | < th | dose independent | rect. | 6 | 19 |
| 648 | 101.09 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 8 |
| 652 | 101.11 | temperature | 25.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 655 | 101.12 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 678 | 101.21 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 10 |
| 686 | 101.22 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 3 |
| 712 | 101.25 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 716 | 101.26 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 721 | 101.27 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 722 | 101.27 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 14 | 23 |
| 725 | 101.29 | radiation | 40.0 | 270 | < th | dose independent | sin | 5 | NA |
| 747 | 101.30 | wind | 1.0 | 14400 | < th | dose independent | rect. | 13 | 11 |
| 750 | 101.31 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 755 | 101.32 | wind | 1.0 | 14400 | < th | dose independent | rect. | 13 | 9 |
| 757 | 101.32 | radiation | 40.0 | 270 | < th | dose independent | rect. | 17 | 23 |
| 785 | 101.38 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 788 | 101.39 | humidity | 90.0 | 30 | < th | dose independent | rect. | 6 | 8 |
| 815 | 101.47 | wind | 9.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 817 | 101.47 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 829 | 101.50 | wind | 9.0 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 836 | 101.52 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 865 | 101.56 | radiation | 1.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 876 | 101.58 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 2 |
| 881 | 101.59 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 886 | 101.60 | radiation | 40.0 | 270 | < th | dose independent | no | NA | NA |
| 896 | 101.62 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 12 | NA |
| 907 | 101.65 | wind | 9.0 | 43200 | > th | dose dependent | sin | 11 | NA |
| 910 | 101.66 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 913 | 101.66 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 914 | 101.66 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 915 | 101.67 | wind | 9.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 922 | 101.68 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 1 | NA |
| 924 | 101.68 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 925 | 101.68 | radiation | 40.0 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 928 | 101.69 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 1 | NA |
| 943 | 101.71 | humidity | 90.0 | 30 | < th | dose independent | rect. | 6 | 6 |
| 970 | 101.75 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |