BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0544800 Os11g0544800|AK064895
(544 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G48520.1 | chr1:17940185-17942540 FORWARD LENGTH=551 818 0.0
>AT1G48520.1 | chr1:17940185-17942540 FORWARD LENGTH=551
Length = 550
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/551 (71%), Positives = 462/551 (83%), Gaps = 12/551 (2%)
Query: 1 MALTLLRGMR--------TPVVARRNAGLF-FTTLQSPLLSRFTMRAESARAAAPKSIQL 51
M+ TLLR ++ T ++ RR + F + S + + S APK+ +
Sbjct: 1 MSTTLLRTIQLNQFSLLGTSLLRRRRSNNFSVRSCGSQTTTTHEAKQSSPTRVAPKNHK- 59
Query: 52 ATKEAAEQKAQGFEAVIGIETHVQLSTVTKAFCSCPYSYGSQPNSTVCPTCMGHPGTLPV 111
++ + +EAVIGIETHVQLST+TKAFCSC +YGS PN+++CP CMG PG LPV
Sbjct: 60 --SNQLDEILRDYEAVIGIETHVQLSTLTKAFCSCSNNYGSYPNTSICPVCMGLPGALPV 117
Query: 112 LNAKVVECAVRLGLALNCEIAMTSKFDRKQYFYPDLPKGYQISQFDIPIAKEGYLDLDLP 171
LN+KVVE VRLGLALNC++++ SKFDRKQYFYPDLPKGYQISQFDIPIA GY+D+D+P
Sbjct: 118 LNSKVVEFGVRLGLALNCDLSLKSKFDRKQYFYPDLPKGYQISQFDIPIASGGYVDVDIP 177
Query: 172 VEFGGGHRRFGVTRVHMEEDAGKLLHSESGSYSQVDLNRAGVPLLEIVSEPDMRTGIEAA 231
+EFGGGHRRFG+TRVHMEEDAGKLLHS++G YSQVDLNRAGVPLLEIVSEPDMR+GIEAA
Sbjct: 178 LEFGGGHRRFGITRVHMEEDAGKLLHSDTGDYSQVDLNRAGVPLLEIVSEPDMRSGIEAA 237
Query: 232 EYGAELQRLVRYLGVSNGNMQEGSLRCDVNVSVRPIGQSNFGTKVEIKNMNSFSAISRAI 291
EY E+QR+ RYLGVSNGNMQEGSLRCDVN+S+RPIGQ+ FGTKVEIKN+N+FSAISRAI
Sbjct: 238 EYACEMQRIARYLGVSNGNMQEGSLRCDVNISIRPIGQAEFGTKVEIKNLNAFSAISRAI 297
Query: 292 DYEISRQILLHKEGQADQIVQETRLWDESSQKTFTMRKKEGLADYRYFPEPDLPEVVLTS 351
D+EISRQ LL+ +G+ADQIV ETRLW+E +QKT TMRKKEGLADYRYFPEPDLPEV+LT
Sbjct: 298 DFEISRQALLYNQGKADQIVTETRLWEEGAQKTVTMRKKEGLADYRYFPEPDLPEVILTQ 357
Query: 352 EYIDEIQNSMPELPEAKRRRFENMGLSMQDVLFLANDDNVARFFDSTLEHGADAKLAANW 411
EY+D I+ S+PELPEAKRRR+E MGL MQDVLFLAND +VA +FD+ + GA+ KLAANW
Sbjct: 358 EYVDSIRASLPELPEAKRRRYEAMGLGMQDVLFLANDVSVAEYFDAVIGKGAEVKLAANW 417
Query: 412 IMGDIAAYLKNEKLSIDEIKLTPLELSELIASIRNGTISGKIGKEILIELIAKGGTVKSV 471
IM DIAAYLKNEKLSI++IKLTP EL+ELIA+I++GTISGKIGKEIL EL+AKGGTVK +
Sbjct: 418 IMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGKEILFELLAKGGTVKGM 477
Query: 472 IEEKDLVQIADPAAIEAMVDQVLADNPKQLEQYRSGKTKLQGFFAGQVMKASKGKANPVL 531
I+ KDLVQI DPA IE MV QV+++NPKQLEQYRSGKTKLQG+FAGQVMK SKGKANP L
Sbjct: 478 IKAKDLVQITDPAEIEKMVIQVVSENPKQLEQYRSGKTKLQGYFAGQVMKMSKGKANPGL 537
Query: 532 LNKILGEKLKA 542
LNKIL EKL A
Sbjct: 538 LNKILLEKLNA 548
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,120,682
Number of extensions: 464053
Number of successful extensions: 1210
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1210
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 441
Effective length of database: 8,282,721
Effective search space: 3652679961
Effective search space used: 3652679961
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)