Os11g0539800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Xaa-Pro aminopeptidase 1.
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Os11g0539800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Xaa-Pro aminopeptidase 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.6 | 0.26 | 13.2 | -0.216 | 0.338 | 0.459 | 0.542 | 0.295 | -1.11 | 20.7 | 20.52 | 1318 | -- | -- |
| 30.68 | 0.258 | 13.2 | -0.313 | 0.339 | 0.394 | 0.6 | -- | -1.16 | 20.5 | 21.3 | 2610 | -- | -- |
| 31.46 | 0.261 | 13.2 | -0.228 | 0.342 | 0.471 | -- | 0.329 | -1.11 | 20.2 | 20.57 | 1291 | -- | -- |
| 31.64 | 0.262 | 13.2 | -0.319 | 0.341 | 0.402 | -- | -- | -1.15 | 20.2 | 21.38 | 2583 | -- | -- |
| 37.52 | 0.285 | 13.2 | -0.272 | -- | 0.536 | -- | 0.395 | -1.13 | -- | 20.4 | 2219 | -- | -- |
| 34.82 | 0.277 | 13.2 | -0.0936 | 0.344 | -- | 0.599 | -- | -1.03 | 20.9 | -- | -- | -- | -- |
| 35.96 | 0.281 | 13.2 | -0.112 | 0.348 | -- | -- | -- | -1.03 | 20.5 | -- | -- | -- | -- |
| 37.74 | 0.286 | 13.2 | -0.32 | -- | 0.418 | -- | -- | -1.15 | -- | 21.3 | 2350 | -- | -- |
| 33.36 | 0.269 | 13.2 | -- | 0.34 | 0.268 | -- | -- | -1.1 | 20.2 | 22.3 | 2482 | -- | -- |
| 42.72 | 0.305 | 13.2 | -0.114 | -- | -- | -- | -- | -1.03 | -- | -- | -- | -- | -- |
| 36.29 | 0.282 | 13.2 | -- | 0.348 | -- | -- | -- | -1.01 | 20.5 | -- | -- | -- | -- |
| 39.61 | 0.293 | 13.2 | -- | -- | 0.289 | -- | -- | -1.11 | -- | 22.3 | 2359 | -- | -- |
| 43.07 | 0.306 | 13.2 | -- | -- | -- | -- | -- | -1.02 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.05 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 4 |
| 4 | 29.22 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 17 | 29.46 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 38 | 29.69 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 45 | 29.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 58 | 29.80 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 109 | 30.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 118 | 30.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 122 | 30.08 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 5 |
| 127 | 30.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 8 |
| 138 | 30.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 146 | 30.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 5 |
| 161 | 30.14 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 5 |
| 162 | 30.14 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 171 | 30.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 183 | 30.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 191 | 30.16 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 23 | 7 |
| 193 | 30.16 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 199 | 30.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 225 | 30.21 | radiation | 40 | 270 | > th | dose independent | rect. | 12 | 1 |
| 245 | 30.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 258 | 30.24 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 303 | 30.28 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 335 | 30.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 359 | 30.34 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 361 | 30.35 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 380 | 30.37 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 406 | 30.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 440 | 30.43 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 641 | 30.60 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 669 | 30.62 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 2 |
| 688 | 30.63 | radiation | 40 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 740 | 30.67 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 17 | 8 |
| 743 | 30.67 | atmosphere | 1005 | 10 | > th | dose dependent | sin | 8 | NA |
| 803 | 30.71 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 17 | 6 |
| 971 | 30.81 | humidity | 90 | 10 | < th | dose independent | sin | 9 | NA |
| 980 | 30.81 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 17 | 13 |
| 990 | 30.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 994 | 30.82 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |