Os11g0529900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Type III polyketide synthase family protein.
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Os11g0529900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Type III polyketide synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 160.05 | 0.594 | 7.22 | 1.16 | 1.43 | 2.79 | 0.118 | 3.22 | -0.222 | 16.5 | 18.9 | 6448 | -- | -- |
| 171.45 | 0.61 | 7.07 | 1.6 | 1.36 | 2.19 | -0.117 | -- | -0.0449 | 16.2 | 18.99 | 6436 | -- | -- |
| 160.08 | 0.589 | 7.22 | 1.17 | 1.44 | 2.79 | -- | 3.22 | -0.221 | 16.5 | 18.9 | 6447 | -- | -- |
| 169.46 | 0.606 | 7.06 | 1.56 | 1.46 | 2.09 | -- | -- | -0.0879 | 16.6 | 18.9 | 6425 | -- | -- |
| 266.78 | 0.761 | 7.22 | 1.19 | -- | 3.04 | -- | 3.66 | -0.241 | -- | 18.9 | 6926 | -- | -- |
| 210.25 | 0.68 | 7.2 | 0.151 | 1.44 | -- | 0.177 | -- | -0.624 | 16.4 | -- | -- | -- | -- |
| 210.33 | 0.679 | 7.2 | 0.153 | 1.45 | -- | -- | -- | -0.623 | 16.4 | -- | -- | -- | -- |
| 275.95 | 0.774 | 7.07 | 1.35 | -- | 1.9 | -- | -- | -0.163 | -- | 19.1 | 6848 | -- | -- |
| 203.26 | 0.668 | 7.19 | -- | 1.5 | 0.512 | -- | -- | -0.588 | 16.3 | 18.9 | 6425 | -- | -- |
| 322.42 | 0.839 | 7.19 | 0.0961 | -- | -- | -- | -- | -0.662 | -- | -- | -- | -- | -- |
| 210.95 | 0.679 | 7.21 | -- | 1.44 | -- | -- | -- | -0.64 | 16.4 | -- | -- | -- | -- |
| 277.05 | 0.775 | 7.16 | -- | -- | 1.04 | -- | -- | -0.402 | -- | 22.3 | 2463 | -- | -- |
| 322.67 | 0.838 | 7.19 | -- | -- | -- | -- | -- | -0.672 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.85 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 2 | 150.65 | temperature | 15.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 6 | 152.13 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 10 | 152.86 | temperature | 15.0 | 10 | > th | dose dependent | sin | 4 | NA |
| 30 | 154.79 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 2 | 11 |
| 50 | 156.11 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 11 |
| 59 | 156.58 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 19 |
| 83 | 157.99 | temperature | 30.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 97 | 158.44 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 13 |
| 124 | 159.42 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 128 | 159.58 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 16 |
| 185 | 161.28 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 196 | 161.51 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 202 | 161.76 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 211 | 161.94 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 252 | 162.56 | temperature | 30.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 265 | 162.76 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 14 |
| 282 | 163.05 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 307 | 163.49 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 316 | 163.57 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 378 | 164.36 | wind | 9.0 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 392 | 164.49 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 486 | 165.81 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 525 | 166.51 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 18 |
| 526 | 166.52 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 529 | 166.53 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 572 | 166.89 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 21 |
| 584 | 166.98 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 638 | 167.30 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 642 | 167.33 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 644 | 167.33 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 21 | 9 |
| 667 | 167.50 | temperature | 25.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 675 | 167.58 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 7 |
| 698 | 167.75 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 768 | 168.18 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 772 | 168.20 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 787 | 168.35 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 10 |
| 795 | 168.43 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 797 | 168.44 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 817 | 168.60 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 858 | 168.91 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 931 | 169.22 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 936 | 169.26 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 937 | 169.26 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 938 | 169.26 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 956 | 169.34 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 958 | 169.35 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 983 | 169.43 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 986 | 169.43 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 988 | 169.44 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 996 | 169.47 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |