BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0529900 Os11g0529900|Os11g0529900
(407 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13930.1 | chr5:4488762-4490035 FORWARD LENGTH=396 333 1e-91
AT4G34850.1 | chr4:16608349-16609720 FORWARD LENGTH=393 230 1e-60
AT4G00040.1 | chr4:14653-15897 FORWARD LENGTH=386 213 2e-55
AT1G02050.1 | chr1:359164-360441 REVERSE LENGTH=396 200 1e-51
>AT5G13930.1 | chr5:4488762-4490035 FORWARD LENGTH=396
Length = 395
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 173/382 (45%), Positives = 224/382 (58%), Gaps = 15/382 (3%)
Query: 29 AAVLAIGTANPASWVTQEEYVDWYFRVTNSEHLADLKAKMKRICDKSGIKKRHFHLTEEL 88
A +LAIGTANP + V Q EY D+YFR+TNSEH+ DLK K KR+CDKS I+KRH HLTEE
Sbjct: 22 AGILAIGTANPENHVLQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHLTEEF 81
Query: 89 LADHPDFADRAQPSXXXXXXXXXXXXXXXXXXXXXXXXXXEWGRPAGDITHLVVTTNSGG 148
L ++P PS EWG+P ITH+V T SG
Sbjct: 82 LKENPHMCAYMAPSLDTRQDIVVVEVPKLGKEAAVKAIK-EWGQPKSKITHVVFCTTSGV 140
Query: 149 HVVGADVRLARVLGLRPTVRRTLLYLGGCSAGSGALRLAKDLAENTPGARVLVACAELNL 208
+ GAD +L ++LGLRP+V+R ++Y GC AG LR+AKDLAEN GARVLV C+E+
Sbjct: 141 DMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRIAKDLAENNRGARVLVVCSEITA 200
Query: 209 IAFRGPEDGCLDTLILQGIFXX-XXXXXXXXXXXXXXXERPIFYMASASQTTIPGTEHAI 267
+ FRGP D LD+L+ Q +F E+PIF M SA+QT +P ++ AI
Sbjct: 201 VTFRGPSDTHLDSLVGQALFSDGAAALIVGSDPDTSVGEKPIFEMVSAAQTILPDSDGAI 260
Query: 268 TGQLRKGGLDYHIAHEMPSLVGEHIAHCVADALAPLXXXXXXXXXXXXXWNGLFWAVHPG 327
G LR+ GL +H+ ++P L+ ++I + +A PL WN LFW HPG
Sbjct: 261 DGHLREVGLTFHLLKDVPGLISKNIVKSLDEAFKPL---------GISDWNSLFWIAHPG 311
Query: 328 GRAILDSVEARLALAPGKLAANRRVLGEFGNMAGATVFFVLDELRRARGEG----EQRGC 383
G AILD VE +L L K+ A R VL E+GNM+ A V F+LDE+RR + G
Sbjct: 312 GPAILDQVEIKLGLKEEKMRATRHVLSEYGNMSSACVLFILDEMRRKSAKDGVATTGEGL 371
Query: 384 EWGVAVAFGPGVTVETMVLRAV 405
EWGV FGPG+TVET+VL +V
Sbjct: 372 EWGVLFGFGPGLTVETVVLHSV 393
>AT4G34850.1 | chr4:16608349-16609720 FORWARD LENGTH=393
Length = 392
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/379 (33%), Positives = 198/379 (52%), Gaps = 14/379 (3%)
Query: 29 AAVLAIGTANPASWVTQEEYVDWYFRVTNSEHLADLKAKMKRICDKSGIKKRHFHLTEEL 88
A +LA+G A P V QE VD YF+ T + +LK K+ R+C + +K R+ ++EE+
Sbjct: 20 ATILALGKAFPHQLVMQEYLVDGYFKTTKCDD-PELKQKLTRLCKTTTVKTRYVVMSEEI 78
Query: 89 LADHPDFADRAQPSXXXXXXXXXXXXXXXXXXXXXXXXXXEWGRPAGDITHLVVTTNSGG 148
L +P+ A S WGR DITH+V ++S
Sbjct: 79 LKKYPELAIEGG-STVTQRLDICNDAVTEMAVEASRACIKNWGRSISDITHVVYVSSSEA 137
Query: 149 HVVGADVRLARVLGLRPTVRRTLLYLGGCSAGSGALRLAKDLAENTPGARVLVACAELNL 208
+ G D+ LA+ LGL P R LLY GCS G LR+AKD+AEN PG+RVL+A +E +
Sbjct: 138 RLPGGDLYLAKGLGLSPDTHRVLLYFVGCSGGVAGLRVAKDIAENNPGSRVLLATSETTI 197
Query: 209 IAFRGPEDGCLDTLILQGIFXXXXXXXXXXXXXXXXXERPIFYMASASQTTIPGTEHAIT 268
I F+ P L+ +F E+P+F + +A Q +P TE I
Sbjct: 198 IGFKPPSVDRPYDLVGVALFGDGAGAMIIGSDPDPICEKPLFELHTAIQNFLPETEKTID 257
Query: 269 GQLRKGGLDYHIAHEMPSLVGEHIAHCVADALAPLXXXXXXXXXXXXXWNGLFWAVHPGG 328
G+L + G+++ ++ E+P ++ +++ + + +N +FWAVHPGG
Sbjct: 258 GRLTEQGINFKLSRELPQIIEDNVENFCKKLIG-------KAGLAHKNYNQMFWAVHPGG 310
Query: 329 RAILDSVEARLALAPGKLAANRRVLGEFGNMAGATVFFV----LDELRRARGEGEQRGCE 384
AIL+ +E RL L+P KL+ +RR L ++GN + ++ +V L+E ++ R E+ E
Sbjct: 311 PAILNRIEKRLNLSPEKLSPSRRALMDYGNASSNSIVYVLEYMLEESKKVRNMNEEEN-E 369
Query: 385 WGVAVAFGPGVTVETMVLR 403
WG+ +AFGPGVT E ++ R
Sbjct: 370 WGLILAFGPGVTFEGIIAR 388
>AT4G00040.1 | chr4:14653-15897 FORWARD LENGTH=386
Length = 385
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 189/375 (50%), Gaps = 10/375 (2%)
Query: 29 AAVLAIGTANPASWVTQEEYVDWYFRVTNSEHLADLKAKMKRICDKSGIKKRHFHLTEEL 88
A VLA+G A P++ V+QE V+ Y R ++L+ +K K++ +C + +K R+ ++ E
Sbjct: 19 ATVLALGKALPSNVVSQENLVEEYLREIKCDNLS-IKDKLQHLCKSTTVKTRYTVMSRET 77
Query: 89 LADHPDFADRAQPSXXXXXXXXXXXXXXXXXXXXXXXXXXEWGRPAGDITHLVVTTNSGG 148
L +P+ A P+ EWGR DITHLV ++S
Sbjct: 78 LHKYPELATEGSPTIKQRLEIANDAVVQMAYEASLVCIK-EWGRAVEDITHLVYVSSSEF 136
Query: 149 HVVGADVRLARVLGLRPTVRRTLLYLGGCSAGSGALRLAKDLAENTPGARVLVACAELNL 208
+ G D+ L+ LGL V+R +LY GC G LR+AKD+AEN PG+RVL+ +E +
Sbjct: 137 RLPGGDLYLSAQLGLSNEVQRVMLYFLGCYGGLSGLRVAKDIAENNPGSRVLLTTSETTV 196
Query: 209 IAFRGPEDGCLDTLILQGIFXXXXXXXXXXXXXXXXXERPIFYMASASQTTIPGTEHAIT 268
+ FR P L+ +F E P + A Q +P T+ I
Sbjct: 197 LGFRPPNKARPYNLVGAALFGDGAAALIIGADPTES-ESPFMELHCAMQQFLPQTQGVID 255
Query: 269 GQLRKGGLDYHIAHEMPSLVGEHIAHCVADALAPLXXXXXXXXXXXXXWNGLFWAVHPGG 328
G+L + G+ + + ++P + +++ +A N LFWAVHPGG
Sbjct: 256 GRLSEEGITFKLGRDLPQKIEDNVEEFCKKLVA-------KAGSGALELNDLFWAVHPGG 308
Query: 329 RAILDSVEARLALAPGKLAANRRVLGEFGNMAGATVFFVLDELRRARGEGEQRGCEWGVA 388
AIL +E +L L P KL +RR L ++GN++ T+F+++D++R + G EWG+
Sbjct: 309 PAILSGLETKLKLKPEKLECSRRALMDYGNVSSNTIFYIMDKVRDELEKKGTEGEEWGLG 368
Query: 389 VAFGPGVTVETMVLR 403
+AFGPG+T E ++R
Sbjct: 369 LAFGPGITFEGFLMR 383
>AT1G02050.1 | chr1:359164-360441 REVERSE LENGTH=396
Length = 395
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 196/380 (51%), Gaps = 16/380 (4%)
Query: 29 AAVLAIGTANPASWVTQEEYVDWYFRVTNSEHLADLKAKMKRICDKSGIKKRHFHLTEEL 88
A +LA+G A P+ V QE V+ + R T + A +K K++ +C + +K R+ LT E+
Sbjct: 26 ATLLALGKAFPSQVVPQENLVEGFLRDTKCDD-AFIKEKLEHLCKTTTVKTRYTVLTREI 84
Query: 89 LADHPDFADRAQPSXXXXXXXXXXXXXXXXXXXXXXXXXXEWGRPAGDITHLVVTTNSGG 148
LA +P+ P+ EWGRP DITH+V ++S
Sbjct: 85 LAKYPELTTEGSPTIKQRLEIANEAVVEMALEASLGCIK-EWGRPVEDITHIVYVSSSEI 143
Query: 149 HVVGADVRLARVLGLRPTVRRTLLYLGGCSAGSGALRLAKDLAENTPGARVLVACAELNL 208
+ G D+ L+ LGLR V R +LY GC G LR+AKD+AEN PG+RVL+ +E +
Sbjct: 144 RLPGGDLYLSAKLGLRNDVNRVMLYFLGCYGGVTGLRVAKDIAENNPGSRVLLTTSETTI 203
Query: 209 IAFRGPEDGCLDTLILQGIFXXXXXXXXXXXXXXXXXERPIFYMASASQTTIPGTEHAIT 268
+ FR P L+ +F E P + A Q +PGT++ I
Sbjct: 204 LGFRPPNKARPYDLVGAALF-GDGAAAVIIGADPRECEAPFMELHYAVQQFLPGTQNVIE 262
Query: 269 GQLRKGGLDYHIAHEMPSLVGEHIAHCVADALAPLXXXXXXXXXXXXXWNGLFWAVHPGG 328
G+L + G+++ + ++P + E+I + +N +FWAVHPGG
Sbjct: 263 GRLTEEGINFKLGRDLPQKIEENIEEFCKKLMG-------KAGDESMEFNDMFWAVHPGG 315
Query: 329 RAILDSVEARLALAPGKLAANRRVLGEFGNMAGATVFFVLDELR---RARGEGEQRGCEW 385
AIL+ +E +L L KL ++RR L ++GN++ T+ +V++ +R + +G+ Q EW
Sbjct: 316 PAILNRLETKLKLEKEKLESSRRALVDYGNVSSNTILYVMEYMRDELKKKGDAAQ---EW 372
Query: 386 GVAVAFGPGVTVETMVLRAV 405
G+ +AFGPG+T E +++R++
Sbjct: 373 GLGLAFGPGITFEGLLIRSL 392
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,071,360
Number of extensions: 241015
Number of successful extensions: 491
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 5
Length of query: 407
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 306
Effective length of database: 8,337,553
Effective search space: 2551291218
Effective search space used: 2551291218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)