Os11g0529800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Type III polyketide synthase family protein.
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Os11g0529800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Type III polyketide synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 173.56 | 0.619 | 5.01 | 0.0203 | 0.353 | 2.39 | 0.254 | -1.94 | -0.35 | 9.36 | 24 | 779 | -- | -- |
| 177.57 | 0.621 | 5.06 | -0.25 | 0.323 | 2.68 | -0.209 | -- | -0.413 | 9.72 | 23.42 | 776 | -- | -- |
| 173.75 | 0.614 | 5.01 | 0.0183 | 0.354 | 2.4 | -- | -1.82 | -0.346 | 9.5 | 23.99 | 778 | -- | -- |
| 177.56 | 0.621 | 5.05 | -0.268 | 0.339 | 2.7 | -- | -- | -0.427 | 9.56 | 23.54 | 778 | -- | -- |
| 180.26 | 0.625 | 5.01 | 0.107 | -- | 2.49 | -- | -2 | -0.288 | -- | 24.78 | 770 | -- | -- |
| 274.92 | 0.777 | 5.15 | -0.983 | 0.638 | -- | -0.39 | -- | -0.9 | 10.2 | -- | -- | -- | -- |
| 275.51 | 0.777 | 5.15 | -0.999 | 0.642 | -- | -- | -- | -0.901 | 10.1 | -- | -- | -- | -- |
| 183.93 | 0.632 | 5.05 | -0.23 | -- | 2.84 | -- | -- | -0.39 | -- | 23.68 | 770 | -- | -- |
| 179.2 | 0.623 | 5.04 | -- | 0.327 | 2.83 | -- | -- | -0.38 | 9.47 | 23.51 | 791 | -- | -- |
| 300.39 | 0.81 | 5.17 | -1.01 | -- | -- | -- | -- | -0.902 | -- | -- | -- | -- | -- |
| 301.83 | 0.813 | 5.13 | -- | 0.647 | -- | -- | -- | -0.79 | 10.2 | -- | -- | -- | -- |
| 185.14 | 0.634 | 5.05 | -- | -- | 2.94 | -- | -- | -0.35 | -- | 23.66 | 778 | -- | -- |
| 327.17 | 0.844 | 5.14 | -- | -- | -- | -- | -- | -0.79 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 172.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 31 | 174.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 53 | 175.05 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 62 | 175.45 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 85 | 177.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 109 | 178.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 116 | 179.35 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 148 | 180.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 202 | 182.80 | temperature | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 234 | 184.10 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 241 | 184.38 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 271 | 185.16 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 273 | 185.19 | humidity | 70 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 274 | 185.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 280 | 185.26 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 285 | 185.30 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 18 |
| 286 | 185.32 | humidity | 60 | 43200 | < th | dose dependent | sin | 6 | NA |
| 299 | 185.40 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 327 | 185.66 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 359 | 185.94 | humidity | 60 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 431 | 186.52 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 468 | 186.74 | humidity | 60 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 487 | 186.83 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 488 | 186.83 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 493 | 186.84 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 22 |
| 520 | 186.98 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 524 | 187.00 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 20 |
| 525 | 187.00 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 19 |
| 580 | 187.09 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 617 | 187.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 690 | 187.26 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 743 | 187.40 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 827 | 187.69 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 921 | 188.02 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 21 |
| 984 | 188.26 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 995 | 188.31 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |