Os11g0529500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Type III polyketide synthase family protein.
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Os11g0529500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Type III polyketide synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 287.82 | 0.797 | 5.94 | 0.435 | 0.735 | -1.03 | -0.356 | -2.86 | -0.294 | 19.3 | 21.55 | 2020 | -- | -- |
| 301.84 | 0.809 | 5.84 | 1.05 | 0.814 | -0.768 | -0.657 | -- | -0.149 | 19.6 | 21.9 | 742 | -- | -- |
| 288.15 | 0.791 | 5.94 | 0.432 | 0.735 | -1.04 | -- | -2.91 | -0.296 | 19.3 | 21.54 | 2016 | -- | -- |
| 303.13 | 0.811 | 5.84 | 1.1 | 0.82 | -0.768 | -- | -- | -0.127 | 19.4 | 21.9 | 638 | -- | -- |
| 313.98 | 0.825 | 5.91 | 0.425 | -- | -1.02 | -- | -2.82 | -0.311 | -- | 21.6 | 1575 | -- | -- |
| 327.65 | 0.849 | 5.89 | 0.822 | 0.683 | -- | -0.735 | -- | -0.369 | 19.1 | -- | -- | -- | -- |
| 329.08 | 0.85 | 5.89 | 0.837 | 0.681 | -- | -- | -- | -0.371 | 19.1 | -- | -- | -- | -- |
| 331.62 | 0.848 | 5.82 | 1.17 | -- | -0.844 | -- | -- | -0.131 | -- | 21.8 | 1575 | -- | -- |
| 332.36 | 0.849 | 5.88 | -- | 0.764 | -0.539 | -- | -- | -0.304 | 19.4 | 22.33 | 634 | -- | -- |
| 353.59 | 0.879 | 5.88 | 0.824 | -- | -- | -- | -- | -0.383 | -- | -- | -- | -- | -- |
| 347.53 | 0.872 | 5.91 | -- | 0.673 | -- | -- | -- | -0.464 | 19.2 | -- | -- | -- | -- |
| 361.3 | 0.885 | 5.86 | -- | -- | -0.48 | -- | -- | -0.33 | -- | 22.5 | 1403 | -- | -- |
| 371.5 | 0.9 | 5.9 | -- | -- | -- | -- | -- | -0.474 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 275.37 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 3 | 276.25 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 4 | 276.83 | wind | 3.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 6 | 277.18 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 11 | 277.67 | wind | 3.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 13 | 277.70 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 14 | 277.74 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 26 | 278.71 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 48 | 280.15 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 52 | 280.22 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 54 | 280.34 | wind | 3.0 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 58 | 280.53 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 59 | 280.53 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 2 | 5 |
| 63 | 280.79 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 65 | 280.79 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 74 | 281.00 | wind | 3.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 85 | 281.21 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 105 | 281.56 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 113 | 281.62 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 124 | 281.90 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 132 | 282.11 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 133 | 282.14 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 144 | 282.25 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 147 | 282.29 | wind | 3.0 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 148 | 282.31 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 9 |
| 155 | 282.38 | wind | 3.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 160 | 282.52 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 167 | 282.65 | wind | 1.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 195 | 283.05 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 16 |
| 198 | 283.09 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 201 | 283.11 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 12 |
| 209 | 283.26 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 227 | 283.53 | wind | 9.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 238 | 283.64 | wind | 1.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 249 | 283.81 | wind | 3.0 | 14400 | < th | dose dependent | sin | 6 | NA |
| 279 | 284.14 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 297 | 284.32 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 325 | 284.68 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 336 | 284.78 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 355 | 284.92 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 367 | 285.04 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 1 | 11 |
| 371 | 285.10 | wind | 1.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 375 | 285.14 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 389 | 285.29 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 402 | 285.44 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 424 | 285.66 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 457 | 285.98 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 458 | 285.98 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 3 |
| 467 | 286.09 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 472 | 286.14 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 473 | 286.15 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 2 | 10 |
| 487 | 286.28 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 488 | 286.28 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 5 |
| 491 | 286.32 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 6 |
| 494 | 286.35 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 6 |
| 498 | 286.38 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 503 | 286.41 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 508 | 286.43 | wind | 1.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 523 | 286.55 | wind | 1.0 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 529 | 286.58 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 530 | 286.60 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 537 | 286.64 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 596 | 287.06 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 639 | 287.40 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 671 | 287.60 | wind | 1.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 685 | 287.70 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 698 | 287.78 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 714 | 287.93 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 858 | 288.75 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 864 | 288.79 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 865 | 288.79 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 871 | 288.83 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 8 | 5 |
| 874 | 288.84 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 946 | 289.25 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 8 | 2 |