BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0529500 Os11g0529500|J023088E05
(413 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13930.1 | chr5:4488762-4490035 FORWARD LENGTH=396 303 1e-82
AT4G34850.1 | chr4:16608349-16609720 FORWARD LENGTH=393 243 2e-64
AT4G00040.1 | chr4:14653-15897 FORWARD LENGTH=386 220 1e-57
AT1G02050.1 | chr1:359164-360441 REVERSE LENGTH=396 211 6e-55
>AT5G13930.1 | chr5:4488762-4490035 FORWARD LENGTH=396
Length = 395
Score = 303 bits (776), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 162/384 (42%), Positives = 216/384 (56%), Gaps = 13/384 (3%)
Query: 13 ATVLAIGTANPAKCVAQEEYVDWYFRVTKSDHLVDLKAKMKRMCDKSGIRKRHLCLTEDM 72
A +LAIGTANP V Q EY D+YFR+T S+H+ DLK K KRMCDKS IRKRH+ LTE+
Sbjct: 22 AGILAIGTANPENHVLQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHLTEEF 81
Query: 73 IAAHPELLDRAAPSLDARLGIARDXXXXXXXXXXXXXXXXXXXXXXDITHLVVSTNAGAH 132
+ +P + APSLD R I ITH+V T +G
Sbjct: 82 LKENPHMCAYMAPSLDTRQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHVVFCTTSGVD 141
Query: 133 APGADARLAELLGLRATVQRTVLYMHGCSAGCSALRLAKDIAESNRRARVLVACAEVFLI 192
PGAD +L +LLGLR +V+R ++Y GC AG + LR+AKD+AE+NR ARVLV C+E+ +
Sbjct: 142 MPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRIAKDLAENNRGARVLVVCSEITAV 201
Query: 193 ALAAPDEARLDALVAASLFGDGAGAVIVGTDGDDDPGAPVEHPPIFHMLSASQTTIAGTH 252
P + LD+LV +LF DGA A+IVG+ DP V PIF M+SA+QT + +
Sbjct: 202 TFRGPSDTHLDSLVGQALFSDGAAALIVGS----DPDTSVGEKPIFEMVSAAQTILPDSD 257
Query: 253 QRVSLQLSERGLDYKISGEVPALVRAGIERCMEDXXXXXXXXXXXXXWNHLLWAMHPGGR 312
+ L E GL + + +VP L+ I + +++ WN L W HPGG
Sbjct: 258 GAIDGHLREVGLTFHLLKDVPGLISKNIVKSLDE----AFKPLGISDWNSLFWIAHPGGP 313
Query: 313 AILDSYEAGLRLEPGKLAASRRVLSEYGNMSGAAIIFVXXXXXXXXXXXXXXXXXXXXSD 372
AILD E L L+ K+ A+R VLSEYGNMS A ++F+ +
Sbjct: 314 AILDQVEIKLGLKEEKMRATRHVLSEYGNMSSACVLFI-----LDEMRRKSAKDGVATTG 368
Query: 373 EYCEWGAMVGVGPGLTIETMVLRA 396
E EWG + G GPGLT+ET+VL +
Sbjct: 369 EGLEWGVLFGFGPGLTVETVVLHS 392
>AT4G34850.1 | chr4:16608349-16609720 FORWARD LENGTH=393
Length = 392
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/383 (34%), Positives = 205/383 (53%), Gaps = 14/383 (3%)
Query: 13 ATVLAIGTANPAKCVAQEEYVDWYFRVTKSDHLVDLKAKMKRMCDKSGIRKRHLCLTEDM 72
AT+LA+G A P + V QE VD YF+ TK D +LK K+ R+C + ++ R++ ++E++
Sbjct: 20 ATILALGKAFPHQLVMQEYLVDGYFKTTKCDD-PELKQKLTRLCKTTTVKTRYVVMSEEI 78
Query: 73 IAAHPELLDRAAPSLDARLGIARDXXXXXXXXXXXXXXXXXXXXXXDITHLVVSTNAGAH 132
+ +PEL ++ RL I D DITH+V +++ A
Sbjct: 79 LKKYPELAIEGGSTVTQRLDICNDAVTEMAVEASRACIKNWGRSISDITHVVYVSSSEAR 138
Query: 133 APGADARLAELLGLRATVQRTVLYMHGCSAGCSALRLAKDIAESNRRARVLVACAEVFLI 192
PG D LA+ LGL R +LY GCS G + LR+AKDIAE+N +RVL+A +E +I
Sbjct: 139 LPGGDLYLAKGLGLSPDTHRVLLYFVGCSGGVAGLRVAKDIAENNPGSRVLLATSETTII 198
Query: 193 ALAAPDEARLDALVAASLFGDGAGAVIVGTDGDDDPGAPVEHPPIFHMLSASQTTIAGTH 252
P R LV +LFGDGAGA+I+G+D D P+ P+F + +A Q + T
Sbjct: 199 GFKPPSVDRPYDLVGVALFGDGAGAMIIGSDPD-----PICEKPLFELHTAIQNFLPETE 253
Query: 253 QRVSLQLSERGLDYKISGEVPALVRAGIERCMEDXXXXXXXXXXXXXWNHLLWAMHPGGR 312
+ + +L+E+G+++K+S E+P ++ +E + +N + WA+HPGG
Sbjct: 254 KTIDGRLTEQGINFKLSRELPQIIEDNVENFCKK--LIGKAGLAHKNYNQMFWAVHPGGP 311
Query: 313 AILDSYEAGLRLEPGKLAASRRVLSEYGNMSGAAIIFVXXXXXXXXXXXXXXXXXXXXSD 372
AIL+ E L L P KL+ SRR L +YGN S +I++V ++
Sbjct: 312 AILNRIEKRLNLSPEKLSPSRRALMDYGNASSNSIVYV------LEYMLEESKKVRNMNE 365
Query: 373 EYCEWGAMVGVGPGLTIETMVLR 395
E EWG ++ GPG+T E ++ R
Sbjct: 366 EENEWGLILAFGPGVTFEGIIAR 388
>AT4G00040.1 | chr4:14653-15897 FORWARD LENGTH=386
Length = 385
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 130/385 (33%), Positives = 191/385 (49%), Gaps = 20/385 (5%)
Query: 12 HATVLAIGTANPAKCVAQEEYVDWYFRVTKSDHLVDLKAKMKRMCDKSGIRKRHLCLTED 71
ATVLA+G A P+ V+QE V+ Y R K D+L +K K++ +C + ++ R+ ++ +
Sbjct: 18 KATVLALGKALPSNVVSQENLVEEYLREIKCDNL-SIKDKLQHLCKSTTVKTRYTVMSRE 76
Query: 72 MIAAHPELLDRAAPSLDARLGIARDXXXXXXXXXXXXXXXXXXXXXXDITHLVVSTNAGA 131
+ +PEL +P++ RL IA D DITHLV +++
Sbjct: 77 TLHKYPELATEGSPTIKQRLEIANDAVVQMAYEASLVCIKEWGRAVEDITHLVYVSSSEF 136
Query: 132 HAPGADARLAELLGLRATVQRTVLYMHGCSAGCSALRLAKDIAESNRRARVLVACAEVFL 191
PG D L+ LGL VQR +LY GC G S LR+AKDIAE+N +RVL+ +E +
Sbjct: 137 RLPGGDLYLSAQLGLSNEVQRVMLYFLGCYGGLSGLRVAKDIAENNPGSRVLLTTSETTV 196
Query: 192 IALAAPDEARLDALVAASLFGDGAGAVIVGTDGDDDPGAPVE-HPPIFHMLSASQTTIAG 250
+ P++AR LV A+LFGDGA A+I+G D P E P + A Q +
Sbjct: 197 LGFRPPNKARPYNLVGAALFGDGAAALIIGAD-------PTESESPFMELHCAMQQFLPQ 249
Query: 251 THQRVSLQLSERGLDYKISGEVPALVRAGIERCMEDXXXXXXXXXXXXXWNHLLWAMHPG 310
T + +LSE G+ +K+ ++P + +E + N L WA+HPG
Sbjct: 250 TQGVIDGRLSEEGITFKLGRDLPQKIEDNVEEFCKK--LVAKAGSGALELNDLFWAVHPG 307
Query: 311 GRAILDSYEAGLRLEPGKLAASRRVLSEYGNMSGAAIIFVXXXXXXXXXXXXXXXXXXXX 370
G AIL E L+L+P KL SRR L +YGN+S I ++
Sbjct: 308 GPAILSGLETKLKLKPEKLECSRRALMDYGNVSSNTIFYI---------MDKVRDELEKK 358
Query: 371 SDEYCEWGAMVGVGPGLTIETMVLR 395
E EWG + GPG+T E ++R
Sbjct: 359 GTEGEEWGLGLAFGPGITFEGFLMR 383
>AT1G02050.1 | chr1:359164-360441 REVERSE LENGTH=396
Length = 395
Score = 211 bits (537), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 130/387 (33%), Positives = 199/387 (51%), Gaps = 20/387 (5%)
Query: 11 AHATVLAIGTANPAKCVAQEEYVDWYFRVTKSDHLVDLKAKMKRMCDKSGIRKRHLCLTE 70
AT+LA+G A P++ V QE V+ + R TK D +K K++ +C + ++ R+ LT
Sbjct: 24 GKATLLALGKAFPSQVVPQENLVEGFLRDTKCDDAF-IKEKLEHLCKTTTVKTRYTVLTR 82
Query: 71 DMIAAHPELLDRAAPSLDARLGIARDXXXXXXXXXXXXXXXXXXXXXXDITHLVVSTNAG 130
+++A +PEL +P++ RL IA + DITH+V +++
Sbjct: 83 EILAKYPELTTEGSPTIKQRLEIANEAVVEMALEASLGCIKEWGRPVEDITHIVYVSSSE 142
Query: 131 AHAPGADARLAELLGLRATVQRTVLYMHGCSAGCSALRLAKDIAESNRRARVLVACAEVF 190
PG D L+ LGLR V R +LY GC G + LR+AKDIAE+N +RVL+ +E
Sbjct: 143 IRLPGGDLYLSAKLGLRNDVNRVMLYFLGCYGGVTGLRVAKDIAENNPGSRVLLTTSETT 202
Query: 191 LIALAAPDEARLDALVAASLFGDGAGAVIVGTDGDDDPGAPVE-HPPIFHMLSASQTTIA 249
++ P++AR LV A+LFGDGA AVI+G D P E P + A Q +
Sbjct: 203 ILGFRPPNKARPYDLVGAALFGDGAAAVIIGAD-------PRECEAPFMELHYAVQQFLP 255
Query: 250 GTHQRVSLQLSERGLDYKISGEVPALVRAGIERCMEDXXXXXXXXXXXXXWNHLLWAMHP 309
GT + +L+E G+++K+ ++P + IE + +N + WA+HP
Sbjct: 256 GTQNVIEGRLTEEGINFKLGRDLPQKIEENIEEFCKK--LMGKAGDESMEFNDMFWAVHP 313
Query: 310 GGRAILDSYEAGLRLEPGKLAASRRVLSEYGNMSGAAIIFVXXXXXXXXXXXXXXXXXXX 369
GG AIL+ E L+LE KL +SRR L +YGN+S I++V
Sbjct: 314 GGPAILNRLETKLKLEKEKLESSRRALVDYGNVSSNTILYV---------MEYMRDELKK 364
Query: 370 XSDEYCEWGAMVGVGPGLTIETMVLRA 396
D EWG + GPG+T E +++R+
Sbjct: 365 KGDAAQEWGLGLAFGPGITFEGLLIRS 391
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,253,620
Number of extensions: 248629
Number of successful extensions: 567
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 4
Length of query: 413
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 312
Effective length of database: 8,337,553
Effective search space: 2601316536
Effective search space used: 2601316536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)